genome.fa.s1979.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399232.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_250.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26623

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
836--1486	170	3.8	169	81	5	686	37	12	13	36	1.83
1710--2099	170	2.3	169	80	5	419	35	13	14	36	1.85
2708--3857	171	6.7	172	78	5	886	37	12	11	38	1.80
4557--4870	170	1.9	161	82	2	317	37	13	10	35	1.79
6235--6544	170	1.9	161	84	5	340	34	13	10	38	1.79
9961--11639	171	9.8	170	77	6	1499	35	13	11	38	1.82
9961--11638	513	3.3	509	80	6	1671	35	13	11	38	1.82
12759--13082	171	1.9	171	82	5	413	33	13	12	40	1.83
14381--16761	171	13.9	171	77	6	1946	35	13	12	38	1.82
14381--16759	342	7.0	341	78	7	2153	35	13	12	38	1.82
14381--16759	511	4.6	508	78	6	2049	35	13	12	38	1.82
14381--16759	682	3.5	677	80	5	2544	35	13	12	38	1.82
16993--17957	170	5.7	169	79	5	944	35	13	13	37	1.84
16993--17988	340	2.9	333	82	6	1047	35	13	13	37	1.85
18123--18166	21	2.0	22	82	4	54	27	2	9	61	1.38
19537--21575	171	12.0	171	78	6	1739	35	13	12	38	1.82
19537--21495	504	3.8	504	76	8	1440	35	13	12	38	1.82
22581--23005	170	2.5	170	79	2	424	33	13	12	37	1.83
23223--24058	171	4.9	171	77	10	708	35	12	12	39	1.81
23223--24058	343	2.4	342	78	8	858	35	12	12	39	1.81
24061--24820	172	4.4	170	78	5	694	36	12	11	39	1.79
26084--26110	12	2.2	12	100	0	54	44	22	22	11	1.84

Tables:   1

The End!