genome.fa.s204.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397457.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_1293.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16562

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1952	171	11.5	169	77	7	1465	35	13	11	39	1.82
1995--2318	171	1.9	169	81	4	391	35	13	14	36	1.85
3390--5123	171	10.2	170	77	5	1527	33	13	12	38	1.83
3884--5123	511	2.4	507	87	2	1718	33	14	12	39	1.83
3390--5123	341	5.1	337	77	6	1358	33	13	12	38	1.83
5767--11689	171	34.9	171	74	9	2993	35	13	12	38	1.84
5767--11689	342	17.4	339	75	8	3994	35	13	12	38	1.84
7210--7502	150	2.0	150	86	2	410	34	12	11	40	1.80
7360--14507	171	41.7	168	73	7	4033	33	13	12	37	1.84
5767--16230	682	15.2	677	71	10	5023	34	13	12	37	1.83
9289--16230	342	20.0	340	69	10	2357	33	13	12	37	1.83
5770--16230	852	12.2	848	71	10	3518	34	13	12	37	1.83
14613--16230	171	9.4	171	78	6	1272	34	13	13	39	1.83
15954--16523	293	1.9	293	82	4	711	34	15	12	37	1.86

Tables:   1

The End!