Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397462.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2257.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16276

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
643--1116
171
2.8
168
77
8
483
40
12
11
36
1.79
5792--6618
171
4.8
170
75
6
632
38
12
12
35
1.81
7656--8065
171
2.4
171
81
5
461
34
13
14
37
1.86
11338--11486
50
2.9
51
68
5
131
32
22
8
36
1.85
11432--15798
171
25.0
169
72
11
1943
35
14
12
38
1.83
11432--13723
171
13.4
170
78
5
2000
35
14
11
38
1.83
11432--15760
514
8.3
511
72
11
2111
35
14
12
38
1.83
13644--13811
88
1.9
88
87
2
248
33
20
10
36
1.86
13474--13982
259
2.0
258
87
3
729
34
17
11
36
1.85
13732--15760
172
11.8
170
78
5
1710
35
13
12
38
1.82
13304--14152
429
2.0
429
84
1
1128
34
16
11
37
1.85
13133--14323
600
2.0
600
83
3
1518
34
15
12
37
1.85
13731--15764
686
3.0
682
79
5
1805
35
13
12
38
1.83

Tables:   1

The End!