Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399344.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2611.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15842

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1127
171
6.6
171
73
6
746
35
13
9
37
1.78
2222--2260
21
1.9
20
84
5
51
46
12
12
28
1.79
1234--3578
171
13.7
171
78
6
1934
35
14
10
38
1.81
4811--6806
172
11.7
170
77
6
1719
35
13
11
38
1.81
4812--6809
514
3.9
514
79
6
1915
35
13
11
38
1.81
7272--7638
171
2.1
169
79
5
389
36
15
9
35
1.80
8559--8885
172
2.0
163
76
11
313
39
12
11
32
1.80
8461--9043
173
3.4
171
76
7
504
40
11
12
33
1.79
10890--11200
173
1.8
171
81
8
389
41
11
11
35
1.77
11534--11862
172
1.9
172
82
1
408
37
11
15
35
1.83
12586--12944
172
2.1
171
78
8
363
40
10
15
34
1.81
13764--14262
171
2.9
170
72
6
454
37
13
13
35
1.83
14435--15007
171
3.4
171
76
3
571
36
15
15
32
1.89
14455--15079
342
1.8
342
84
2
869
36
15
14
33
1.88
14530--15836
171
7.6
170
67
6
544
35
13
13
32
1.84

Tables:   1

The End!