Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397464.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3102.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15438

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
138--480
172
2.0
172
81
5
408
37
13
14
34
1.86
693--1084
172
2.3
172
79
1
464
35
12
14
34
1.83
2170--2811
170
3.8
171
76
5
600
35
13
14
35
1.85
2330--2811
169
2.8
169
80
6
427
36
13
14
35
1.86
2170--2811
341
1.9
341
79
5
724
35
13
14
35
1.85
3708--5912
171
12.9
171
79
5
1971
37
12
14
35
1.83
3708--5912
342
6.5
342
81
3
2273
37
12
14
35
1.83
3708--5918
513
4.3
512
80
4
2283
37
12
14
35
1.83
6023--6387
172
2.1
171
79
6
389
35
15
13
36
1.86
6918--8774
171
10.9
171
73
7
1035
35
14
11
35
1.82
7379--8775
337
4.1
338
74
7
861
35
14
11
36
1.82
8089--8412
169
2.0
159
86
5
366
35
13
12
35
1.82
8940--9926
171
5.9
168
75
9
760
37
14
10
38
1.79
10065--10785
171
4.2
170
76
6
462
35
14
11
36
1.83
10065--10603
170
3.2
169
78
7
450
37
14
11
37
1.82
11482--12138
171
3.8
170
74
6
531
36
14
10
35
1.81
13388--14093
169
4.2
168
76
6
560
35
13
11
36
1.81
14205--15351
171
6.7
171
72
8
635
35
15
11
34
1.84
14225--15438
342
3.6
338
77
6
1045
35
15
11
34
1.84

Tables:   1

The End!