genome.fa.s2128.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399381.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2646.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38058

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--405	174	2.3	170	81	4	427	36	10	12	38	1.78
3421--3469	13	3.6	13	78	15	55	71	4	24	0	1.03
7333--8064	171	4.3	169	77	9	662	35	13	10	40	1.78
8871--9232	172	2.1	172	85	5	491	35	13	12	38	1.83
9766--10091	171	1.9	170	83	3	422	34	15	12	38	1.84
13010--14967	172	11.4	171	78	7	1714	35	14	10	40	1.80
13135--14967	522	3.5	513	82	5	1925	35	14	10	39	1.80
15882--17948	172	12.1	171	77	5	1730	36	13	10	38	1.80
16032--17948	343	5.6	340	79	6	1705	36	13	10	39	1.79
16032--17948	856	2.2	852	79	5	2053	36	13	10	39	1.79
18700--20143	344	4.2	340	78	6	1336	35	13	10	39	1.81
18632--20140	514	2.9	508	81	6	1611	35	14	11	38	1.81
18630--20136	170	8.8	170	78	7	1200	35	14	11	39	1.81
22668--23730	172	6.2	170	69	7	506	33	14	11	37	1.81
24670--25841	173	6.8	172	78	6	1140	34	13	11	39	1.81
24670--25841	345	3.4	340	77	9	1099	34	13	11	39	1.81
26818--26851	16	2.1	16	88	0	50	52	8	2	35	1.47
27312--28943	171	9.5	170	76	7	927	34	13	11	39	1.81
27463--28943	687	2.2	683	81	5	1632	34	13	12	39	1.82
27312--28988	172	9.8	170	76	8	1316	35	13	12	39	1.82
30930--32503	174	9.2	173	77	6	1400	34	14	11	39	1.82
30955--32496	344	4.5	341	82	4	1625	34	14	11	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30954--32503	515	3.0	516	78	6	1504	34	14	11	39	1.82
34453--34808	170	2.1	171	82	3	432	36	13	10	38	1.80
35991--37486	170	8.8	169	78	5	1341	38	12	13	35	1.83
35991--37486	341	4.4	339	79	5	1498	38	12	13	35	1.83
35985--37486	512	2.9	506	84	3	1900	38	12	13	35	1.83
37659--37998	173	2.0	171	81	1	392	38	11	13	36	1.81

Tables:   1

The End!