Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397470.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_532.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14845

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
746--3279
170
15.0
169
77
7
2188
37
11
14
35
1.83
746--3271
341
7.5
336
77
8
2075
37
11
14
35
1.83
3869--4671
170
4.7
168
79
7
750
39
11
13
36
1.80
3869--4671
339
2.4
338
81
6
865
39
11
13
36
1.80
5199--8352
171
18.5
169
76
5
2668
35
13
12
37
1.82
5206--10833
342
16.6
338
74
8
3344
34
13
12
37
1.82
8411--10833
171
14.2
169
75
7
1909
35
13
12
37
1.83
10769--10898
65
2.0
65
90
3
208
30
8
12
48
1.70
10605--11069
246
1.9
240
81
10
567
33
13
12
40
1.82
10834--11521
169
4.0
170
83
6
819
35
14
13
36
1.85
10834--11521
340
2.0
340
88
1
1013
35
14
13
36
1.85
10089--12199
756
2.8
748
85
4
2642
35
13
12
38
1.83
11589--12150
171
3.3
170
80
4
614
36
13
11
38
1.80
11192--11995
415
2.0
408
82
6
980
35
13
12
38
1.83
13854--13887
14
2.4
14
100
0
68
20
23
14
41
1.89
14221--14845
172
3.6
170
77
5
587
35
12
10
39
1.79

Tables:   1

The End!