genome.fa.s218.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397471.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4138.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14790

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372--1337	343	2.8	341	76	6	864	36	13	13	36	1.84
1--1337	171	7.8	170	76	5	1012	34	13	12	35	1.83
1608--3118	171	8.9	171	73	5	860	34	13	13	37	1.84
3353--3668	171	1.8	171	81	0	389	35	14	13	36	1.86
3415--3950	281	1.9	280	79	4	598	35	12	12	39	1.82
3671--7926	171	24.7	170	74	7	2727	34	12	13	38	1.83
3662--7926	684	6.2	680	76	7	3335	34	12	13	38	1.83
3671--7908	514	8.2	509	75	9	1676	34	13	13	38	1.83
8310--10067	171	10.3	172	78	5	1538	34	13	13	38	1.83
10379--13712	170	19.6	170	77	5	2818	34	13	13	37	1.84
10379--13631	341	9.5	336	78	6	2693	34	13	13	37	1.84

Tables:   1

The End!