genome.fa.s2181.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399434.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_27.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23986

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2137	171	12.5	170	78	6	1797	35	14	12	38	1.83
1--2137	343	6.2	336	78	7	1892	35	14	12	38	1.83
2311--3713	171	8.2	169	75	6	1030	35	15	12	35	1.85
1508--3935	806	3.0	807	78	7	1994	34	14	12	37	1.84
2315--4033	851	2.0	853	81	3	2030	35	14	12	36	1.84
4137--5309	171	6.8	171	78	4	943	34	14	13	38	1.84
4294--5247	343	2.8	340	77	6	755	34	13	12	39	1.83
5316--8348	171	17.7	171	77	6	2359	35	14	11	37	1.83
5316--8348	343	8.9	340	76	8	2170	35	14	11	37	1.83
8674--11991	171	19.3	170	72	6	1980	33	14	12	36	1.84
8748--10696	683	2.8	673	77	7	1779	34	14	13	36	1.86
8674--10757	854	2.4	853	85	3	2796	34	14	13	36	1.86
12096--13517	171	8.3	170	76	6	1073	37	11	14	35	1.83
14869--15270	171	2.4	171	79	4	418	35	11	13	39	1.81
15548--16669	171	6.6	168	77	8	836	35	14	12	37	1.84
15613--16518	341	2.6	341	78	6	823	34	14	12	38	1.84
16876--17593	172	4.2	171	79	4	662	34	13	12	38	1.83
18714--19534	171	4.8	170	78	5	622	35	13	12	38	1.83
18715--19534	341	2.4	341	78	6	809	35	13	12	38	1.83
18956--19531	170	3.4	169	81	5	502	35	15	12	36	1.85
19852--21070	171	7.1	171	76	4	949	35	13	12	38	1.83
19852--21070	342	3.6	335	78	4	1165	35	13	12	38	1.83

Tables:   1

The End!