genome.fa.s2200.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399453.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2717.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26374

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13--385	172	2.2	172	80	4	414	34	13	12	36	1.83
2996--4441	343	4.2	341	78	6	1175	37	12	12	36	1.82
2996--4567	172	9.2	171	76	6	1150	37	12	12	36	1.82
4564--5329	171	4.5	173	80	4	824	37	12	13	37	1.81
4117--4977	456	1.9	456	82	3	1090	37	12	12	36	1.81
4117--5018	455	2.0	455	82	4	1086	38	12	12	36	1.80
3948--5193	627	2.0	627	80	4	1406	38	12	12	36	1.82
4573--5329	342	2.2	343	83	5	940	37	12	13	37	1.81
6541--7196	172	3.8	169	75	5	478	35	11	14	36	1.83
7881--10728	172	16.5	172	76	5	2152	37	12	12	35	1.81
10978--11716	171	4.3	172	77	6	566	35	12	12	36	1.82
12413--13870	171	8.5	171	81	3	1486	36	12	14	35	1.85
12413--13860	512	2.8	509	83	5	1720	36	12	14	35	1.85
14439--14981	171	3.2	171	82	5	591	34	14	12	37	1.85
15246--16083	170	4.9	167	75	9	606	36	12	12	37	1.82
17496--22534	172	29.4	171	78	3	4342	35	13	12	37	1.83
17496--22534	685	7.3	681	79	5	4208	35	13	12	37	1.83
23555--23998	171	2.6	172	81	4	434	37	13	12	36	1.83
25785--26374	171	3.5	170	78	2	572	36	13	11	34	1.82

Tables:   1

The End!