genome.fa.s2277.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399530.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_279.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49951

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2938--3278	172	2.0	172	80	6	388	35	13	11	39	1.81
4060--4469	171	2.4	171	91	0	586	33	12	12	41	1.81
4806--5147	169	2.0	169	83	5	431	33	11	11	42	1.78
6180--7932	171	10.3	168	75	5	1228	38	12	12	34	1.81
6184--7932	511	3.4	512	77	4	1226	38	12	12	34	1.80
8369--10712	171	13.7	171	78	3	2095	34	13	12	38	1.83
13470--16980	171	20.5	171	75	5	2533	34	12	11	38	1.80
17579--17903	171	2.0	161	77	9	321	35	10	14	36	1.81
18253--19669	170	8.3	169	79	4	1273	39	12	12	35	1.81
18254--19669	341	4.2	337	80	5	1377	39	12	12	35	1.81
18253--19669	511	2.8	503	80	6	1505	39	12	12	35	1.81
20030--20070	19	2.2	19	100	0	82	51	0	9	39	1.35
20506--20820	168	1.9	160	83	4	323	36	10	13	35	1.80
21017--22818	171	10.7	168	76	7	1318	38	11	12	35	1.80
21003--22814	343	5.4	338	77	9	1315	38	11	12	35	1.80
23678--24837	171	6.8	170	72	6	638	36	12	13	32	1.82
25822--29752	171	23.0	170	79	4	3782	38	12	13	35	1.82
25822--29752	341	11.5	339	79	5	3487	38	12	13	35	1.82
30118--31644	171	8.9	171	80	4	1516	38	12	13	35	1.82
31522--31776	125	2.0	125	85	1	341	34	13	14	37	1.86
31181--32094	466	2.0	466	80	6	1028	39	11	12	36	1.80
31647--33759	171	12.4	170	78	5	1830	38	12	13	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30837--32417	811	2.0	809	80	4	1781	38	12	13	35	1.83
31647--33759	341	6.2	337	79	6	1830	38	12	13	35	1.83
30666--32612	981	2.0	980	81	5	2312	38	12	13	35	1.83
33689--33734	20	2.2	20	84	7	56	52	4	10	32	1.56
33817--34190	172	2.2	171	82	5	452	41	11	10	36	1.76
34932--41773	171	40.0	170	75	5	5092	34	13	12	37	1.82
41373--41732	190	1.9	190	82	5	451	36	13	11	38	1.81
45832--46259	171	2.5	171	83	3	538	34	13	11	41	1.80
47136--49949	171	16.5	170	76	3	2323	34	14	12	37	1.83
47391--49942	683	3.7	682	78	3	2103	34	14	12	36	1.83
47391--49724	854	2.7	855	81	3	2441	34	15	12	36	1.84

Tables:   1

The End!