Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399542.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_28.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21422

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
624--1006
170
2.2
172
75
4
382
34
11
12
38
1.79
1110--3655
172
14.9
171
77
6
2040
38
11
14
35
1.81
1110--3869
170
16.1
169
74
8
1839
37
11
14
35
1.81
3970--8100
171
24.1
171
79
6
3945
38
11
14
36
1.82
3970--8100
515
8.0
513
84
3
4687
38
11
14
36
1.82
9260--9965
170
4.1
170
76
5
543
38
10
14
36
1.81
9314--9965
342
1.9
340
80
6
773
38
10
15
36
1.82
9879--10079
102
2.0
101
85
3
269
32
13
14
39
1.85
9711--10225
272
1.9
274
83
3
671
37
11
13
37
1.81
9986--12512
172
14.8
169
79
6
2129
38
10
14
36
1.81
9548--10409
444
1.9
444
80
6
978
37
11
13
37
1.80
9985--12512
684
3.7
674
80
7
2616
38
10
14
36
1.81
12872--13285
173
2.4
173
83
6
518
39
10
14
36
1.80
13828--14691
173
5.1
170
77
11
688
37
10
15
35
1.83
13995--14283
156
1.9
156
82
7
372
33
11
14
40
1.81
13830--14470
329
1.9
329
84
2
840
37
11
15
36
1.83
14151--14686
172
3.1
172
82
4
496
38
11
15
35
1.83
15345--16277
171
5.4
170
74
6
641
37
10
12
36
1.78
17198--17536
173
2.0
162
81
7
383
34
8
15
37
1.79
17975--20067
171
12.2
172
73
6
1274
36
10
14
34
1.81
18063--19158
516
2.1
516
80
5
1186
38
11
14
35
1.81
19182--19501
168
1.9
161
77
12
319
35
9
15
37
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20339--21228
171
5.2
171
71
5
404
37
10
13
34
1.78
21090--21420
170
2.0
160
77
9
308
37
10
13
36
1.79

Tables:   1

The End!