genome.fa.s2308.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399561.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2816.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26721

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3514--5011	171	8.8	171	73	7	864	36	13	12	37	1.82
4013--5008	513	1.9	510	85	3	1349	37	12	11	38	1.81
6642--7278	341	1.9	342	84	1	857	36	13	11	37	1.80
6615--7338	171	4.2	171	75	6	619	36	14	11	36	1.82
7616--8033	172	2.4	171	80	5	441	33	13	11	40	1.81
8184--8514	171	2.0	160	83	3	333	36	12	12	35	1.81
8663--9496	342	2.4	340	84	6	1069	35	13	11	39	1.82
8663--9568	170	5.3	170	82	4	1022	35	14	11	38	1.82
12268--12596	172	2.0	162	85	3	358	36	13	9	37	1.76
13675--15934	513	4.4	511	78	6	2048	36	13	11	38	1.82
13674--15934	171	13.2	173	76	7	1625	36	13	11	38	1.82
16035--19468	171	20.2	171	77	6	2698	38	11	13	36	1.81
17916--18238	157	2.1	156	79	6	343	37	11	13	37	1.81
16035--19468	512	6.7	510	76	6	2807	38	11	13	36	1.81
19596--19910	171	1.9	161	85	5	350	33	13	12	37	1.81
19596--20011	171	2.5	161	78	11	349	32	14	12	38	1.83
20151--20550	172	2.3	169	81	6	437	34	11	11	42	1.77
20966--21282	171	1.9	170	79	5	361	36	17	10	35	1.84
21901--22818	172	5.4	171	80	3	950	33	14	12	38	1.84
21901--22818	343	2.7	340	80	5	997	33	14	12	38	1.84

Tables:   1

The End!