genome.fa.s2312.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399565.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_282.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64685

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6--509	170	3.0	169	85	3	593	34	13	12	40	1.82
310--347	19	2.1	19	85	5	51	42	2	7	47	1.46
2389--2426	19	2.1	19	85	5	51	42	2	7	47	1.46
3637--5623	343	5.8	340	80	4	2027	34	13	12	38	1.84
3636--5562	687	2.8	678	86	4	2568	34	13	12	38	1.83
3637--5623	171	11.6	171	80	4	1961	34	13	12	38	1.84
5909--6240	171	2.0	160	73	10	184	36	16	11	32	1.84
8509--8850	171	2.0	171	83	1	425	34	13	14	38	1.85
12391--12918	171	3.1	169	77	4	558	33	13	14	36	1.85
13027--14290	171	7.4	171	82	3	1378	33	14	13	37	1.86
14824--15175	171	2.1	171	84	3	458	32	12	16	38	1.86
15342--16013	171	3.9	171	82	0	761	31	12	15	37	1.85
16172--17508	171	7.8	171	82	2	1495	34	14	12	38	1.84
16174--17508	514	2.6	513	82	3	1560	34	14	12	38	1.84
16172--17506	685	1.9	685	90	0	2089	34	14	12	38	1.84
18009--19838	171	10.7	171	79	5	1571	35	13	13	37	1.84
20123--21687	341	4.6	337	78	6	1345	35	14	13	37	1.85
20120--22011	171	11.1	170	77	5	1536	34	14	12	36	1.84
24440--24472	17	1.9	17	88	11	50	33	6	6	54	1.50
24660--26398	171	10.2	170	78	5	1565	34	14	13	38	1.84
24650--26357	513	3.3	508	80	4	1759	34	14	12	37	1.84
26499--27943	172	8.4	171	82	3	1539	38	12	13	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26500--27943	685	2.1	686	89	0	2239	38	12	13	35	1.83
28187--29553	171	8.0	171	79	5	1318	34	13	12	38	1.83
31219--31622	172	2.3	172	80	3	438	37	11	14	34	1.82
32924--35046	171	12.4	170	79	5	1747	38	12	13	34	1.83
33222--34996	855	2.1	852	82	4	2127	38	13	13	34	1.84
32920--35046	514	4.1	510	78	6	1932	38	12	13	34	1.83
36550--39474	171	17.0	171	80	4	2750	38	13	13	34	1.84
36550--39474	343	8.5	340	78	5	2551	38	13	13	34	1.84
43499--44094	171	3.5	170	77	3	559	33	13	15	34	1.87
46121--46159	21	1.9	21	89	5	62	46	5	23	25	1.73
46826--48035	172	7.1	172	75	5	928	34	14	12	37	1.84
47039--48035	342	2.9	337	79	5	979	34	14	13	37	1.85
46817--48053	514	2.4	515	77	6	1249	34	14	12	37	1.84
48620--48940	172	1.9	161	84	5	351	34	11	14	36	1.83
50393--51421	171	6.1	170	80	6	1108	34	14	13	38	1.85
50916--51419	169	3.0	171	82	4	590	34	15	12	37	1.85
52067--52100	17	2.0	18	88	11	54	35	0	2	61	1.11
55388--55714	170	1.9	170	87	1	476	38	16	13	32	1.87
56193--56779	160	3.5	160	76	9	394	35	11	14	37	1.83
56353--56847	172	2.9	169	82	4	548	38	12	12	36	1.81
59573--60030	172	2.7	171	77	6	467	36	12	13	36	1.83
60661--61718	172	6.2	171	80	6	1085	35	13	11	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63731--64681	170	5.6	172	80	6	947	35	13	12	38	1.82
64043--64365	160	2.0	160	84	1	423	38	14	9	37	1.79
63875--64681	332	2.4	329	80	7	861	36	13	12	38	1.81

Tables:   1

The End!