genome.fa.s2314.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399567.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2821.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22625

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1439	171	8.4	169	72	7	774	34	13	12	37	1.82
1--1438	342	4.2	341	75	5	930	34	13	12	37	1.82
4138--6718	171	15.2	170	74	8	1145	39	12	13	34	1.83
4122--6718	341	7.6	341	76	6	1873	39	12	13	34	1.82
4823--5135	160	2.0	159	79	3	342	40	13	13	32	1.83
4474--6717	684	3.3	683	77	7	1794	39	12	13	34	1.83
4976--6718	171	10.2	170	77	5	1350	39	12	13	34	1.82
12477--13264	171	4.6	166	77	8	670	33	14	13	38	1.85
12477--13264	342	2.3	340	82	5	878	33	14	13	38	1.85
19419--20078	169	3.9	170	78	5	641	35	12	12	38	1.81

Tables:   1

The End!