genome.fa.s232.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397485.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4319.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13275

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--407	169	2.4	171	84	3	500	36	12	15	34	1.86
666--4248	171	21.0	171	78	6	3136	38	13	13	34	1.84
666--13275	513	24.6	510	72	11	5156	38	13	13	34	1.84
5120--5181	28	2.3	27	78	13	72	29	12	9	48	1.73
5150--5252	52	1.9	54	86	7	147	30	13	17	38	1.88
5215--5372	45	3.6	45	80	1	194	30	16	18	34	1.93
5215--5390	45	4.0	45	78	1	185	29	17	19	34	1.94
5510--7147	171	9.6	169	78	4	1401	39	13	13	33	1.84
5509--13275	342	22.9	337	73	10	3569	38	12	13	34	1.83
7174--13275	170	35.9	171	78	5	5079	38	12	13	34	1.83
7160--13275	341	18.0	342	77	6	5103	38	12	13	34	1.83
7205--13275	171	35.7	161	73	12	1783	38	12	13	34	1.83

Tables:   1

The End!