Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397490.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_730.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12874

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1314--3930
171
15.3
170
75
7
1822
38
11
12
35
1.81
1317--3930
342
7.6
341
78
7
2306
38
12
12
35
1.81
1317--3930
685
3.8
680
77
7
2519
38
12
12
35
1.81
3465--4381
462
2.0
461
82
4
1125
40
11
12
35
1.80
3968--5137
170
6.8
168
79
8
1186
39
11
12
36
1.80
3968--5124
342
3.4
338
83
6
1347
39
11
12
36
1.79
3968--5146
513
2.3
512
86
4
1637
39
11
12
36
1.80
5165--7483
170
13.7
170
73
7
1457
37
10
14
35
1.81
4527--5781
643
2.0
633
83
3
1533
37
10
14
36
1.81
4692--5577
473
1.9
463
83
2
1064
37
10
13
36
1.80
6252--6712
171
2.7
169
79
6
484
37
10
14
37
1.81
6580--6868
160
1.8
159
83
3
384
37
12
13
37
1.82
5231--7002
495
3.5
492
79
9
1506
38
11
14
36
1.82
7676--12317
343
13.6
341
74
6
1542
37
11
13
35
1.82
7676--9898
171
13.0
171
76
5
1793
37
11
13
35
1.81
10152--10539
171
2.3
172
79
8
414
39
10
13
36
1.79
10880--12320
170
8.4
168
76
8
866
38
12
13
35
1.83
10880--12320
341
4.2
335
83
5
1493
38
12
13
35
1.83
8025--12317
514
8.4
510
72
8
1357
37
11
13
35
1.81
10880--12314
683
2.1
680
81
5
1666
38
12
13
35
1.83

Tables:   1

The End!