genome.fa.s2423.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399676.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2922.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25704

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1586--2928	343	4.0	339	81	6	1440	35	14	12	37	1.84
1887--2928	171	6.1	168	81	7	1057	35	14	12	37	1.84
3786--4329	171	3.2	170	69	8	406	33	13	11	38	1.81
6080--7267	171	6.9	166	73	7	534	34	14	11	36	1.81
6080--6676	171	3.5	168	74	9	537	35	15	11	36	1.83
6817--7136	172	1.9	162	82	10	387	36	14	11	34	1.83
6992--7330	172	2.0	163	82	8	396	33	13	10	39	1.79
9262--10031	172	4.5	173	74	6	647	36	11	14	35	1.82
10315--11809	171	8.8	171	80	5	1402	37	11	13	36	1.82
10315--11809	341	4.4	340	79	7	1449	37	11	13	36	1.82
10389--11809	512	2.8	508	81	6	1607	37	12	13	35	1.82
12430--12783	171	2.1	171	79	7	380	37	11	13	34	1.80
12884--13963	171	6.3	173	82	4	1208	35	15	11	38	1.83
12884--13963	514	2.1	513	83	4	1349	35	15	11	38	1.83
14451--16545	343	6.1	337	76	8	948	35	13	12	38	1.82
14359--16867	171	14.7	171	77	6	1934	35	13	11	38	1.82
14557--16862	514	4.5	507	78	6	1831	36	13	11	37	1.81
14441--16867	857	2.8	848	79	5	2442	35	13	11	38	1.82
16967--17558	171	3.5	164	75	9	510	36	13	11	36	1.82
16974--17803	171	4.9	166	72	8	508	35	13	11	36	1.81
18521--21279	172	16.1	170	80	4	2781	35	14	11	37	1.82
18521--25704	343	21.0	341	72	5	4074	34	13	11	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21440--21741	149	2.0	149	83	3	385	36	14	10	38	1.80
21589--24396	171	16.4	170	75	7	1671	35	13	11	38	1.81
21589--24453	514	5.6	505	76	6	1908	35	13	11	37	1.82
24709--25704	171	5.8	170	75	4	802	33	14	11	36	1.82
24698--25673	512	1.9	504	78	4	1055	33	14	11	36	1.82

Tables:   1

The End!