genome.fa.s245.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397498.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3388.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11947

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250--2544	171	13.5	169	75	7	1693	38	13	13	34	1.84
262--2408	678	3.2	674	78	8	2138	38	13	13	34	1.84
5531--7354	171	10.7	170	72	9	1229	38	12	14	34	1.83
5520--9081	331	10.6	332	76	9	2943	37	12	13	34	1.83
5531--9084	502	7.0	499	73	10	2730	37	12	13	34	1.83
7228--7510	156	1.8	156	82	3	372	34	11	14	39	1.82
7357--9084	171	10.3	170	72	10	1143	37	12	13	34	1.83
9587--10211	171	3.7	171	77	4	584	38	12	13	36	1.82
10799--11206	171	2.4	171	77	5	430	38	13	13	34	1.83

Tables:   1

The End!