genome.fa.s25.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397278.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_7.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2181410

Tables:   1   2   

This is table  2  of  2  ( 177 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1637561--1638304	172	4.4	168	76	7	587	32	13	14	40	1.84
1641207--1641375	86	2.0	86	85	2	232	30	6	13	50	1.66
1651728--1652042	167	1.9	157	82	2	310	31	13	12	40	1.81
1652891--1653492	169	3.5	171	76	7	474	33	12	12	40	1.82
1672110--1672446	172	2.0	171	79	4	374	39	12	12	35	1.80
1675541--1675592	26	2.0	26	81	7	61	1	30	0	67	1.02
1677878--1677921	18	2.3	19	92	7	72	40	2	0	56	1.11
1677870--1677924	18	3.3	16	77	22	60	45	1	0	52	1.11
1679739--1679777	20	2.0	20	85	9	55	53	5	0	41	1.23
1679690--1680866	172	6.9	170	76	6	957	40	12	12	34	1.81
1679676--1680875	343	3.5	337	77	7	1041	40	12	12	34	1.82
1706910--1706957	19	2.6	19	83	3	62	58	0	4	37	1.18
1708071--1708119	18	2.6	19	83	6	55	40	4	2	53	1.32
1715298--1715346	18	2.6	19	87	6	64	42	2	2	53	1.24
1746434--1747508	171	6.3	171	76	7	770	39	14	13	32	1.85
1775759--1776907	171	6.7	169	76	5	850	38	13	12	34	1.84
1775759--1776883	170	6.6	171	76	6	656	38	13	13	34	1.84
1775800--1776913	342	3.3	335	77	5	1002	38	13	12	35	1.83
1792852--1792888	15	2.3	17	86	9	51	29	2	8	59	1.40
1795920--1796711	171	4.6	169	78	9	655	33	11	12	42	1.79
1795903--1796786	170	5.2	170	79	7	803	33	12	13	41	1.81
1816748--1817056	171	1.9	160	82	4	316	32	10	11	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1825325--1825362	20	2.0	18	90	10	58	36	0	10	52	1.36
1829526--1829564	21	1.9	20	85	15	53	38	0	5	56	1.22
1847691--1847730	5	7.6	5	83	10	53	55	2	22	20	1.56
1871967--1872007	18	2.2	20	86	8	59	36	2	4	56	1.34
1880779--1881111	172	2.0	160	84	5	348	35	14	11	36	1.82
1880613--1881679	171	6.3	169	75	8	713	34	13	13	37	1.84
1880596--1881679	335	3.2	336	76	8	1050	34	13	13	37	1.84
1881893--1883776	171	11.0	172	77	6	1493	35	13	12	38	1.82
1890252--1890334	35	2.4	35	79	4	96	32	25	12	30	1.92
1890766--1890852	22	4.0	22	93	3	149	25	21	14	37	1.92
1901338--1901383	22	2.1	22	91	0	74	45	4	4	45	1.43
1906529--1906566	20	1.9	20	88	0	58	34	7	7	50	1.61
1940982--1941385	172	2.3	172	80	4	420	34	13	11	34	1.82
1962856--1963085	123	1.9	114	81	10	191	34	14	15	31	1.88
1963954--1963982	2	14.5	2	100	0	58	0	0	48	51	1.00
1964988--1965028	22	1.9	22	90	5	66	0	29	0	70	0.87
1964987--1965035	22	2.3	21	83	13	64	0	30	0	69	0.89
1970480--1970514	14	2.5	14	85	0	52	60	0	0	40	0.97
1984222--1984260	11	3.5	11	85	3	51	30	2	0	66	1.05
1990646--1990680	10	3.4	10	88	4	52	25	0	0	74	0.82
1990960--1991967	170	5.9	170	76	7	812	40	13	12	33	1.82
2015651--2015689	15	2.6	15	100	0	78	38	15	23	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2019891--2020285	172	2.3	174	80	6	421	34	10	13	42	1.78
2030146--2030185	15	2.9	13	86	13	62	47	2	0	50	1.14
2044585--2044914	173	2.0	162	85	4	369	35	8	12	40	1.75
2044499--2045168	172	3.9	170	75	8	500	33	11	13	40	1.81
2054203--2054248	23	2.0	23	86	4	65	34	0	0	65	0.93
2054206--2054235	14	2.1	15	93	6	53	36	0	0	63	0.95
2079220--2079257	20	2.0	20	90	10	62	50	10	0	39	1.37
2094101--2094160	32	1.9	32	82	3	77	31	3	28	36	1.74
2103742--2103775	17	2.0	17	94	0	59	41	20	5	32	1.76
2123205--2123311	35	3.1	35	86	0	142	39	8	10	42	1.69
2149172--2149214	19	2.3	19	88	4	61	41	2	2	53	1.26
2153808--2153886	30	2.7	29	80	7	88	44	7	12	35	1.71
2177181--2177238	29	2.0	29	86	6	82	39	15	10	34	1.81

Tables:   1   2

The End!