genome.fa.s25.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397278.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_7.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2181410

Tables:   1   2   

This is table  1  of  2  ( 177 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15143--15183	18	2.3	18	95	0	73	17	21	24	36	1.94
18607--18647	18	2.3	18	91	0	64	39	24	19	17	1.92
39027--39054	12	2.3	12	100	0	56	53	7	25	14	1.66
46226--46550	170	2.0	161	83	4	334	35	12	14	35	1.84
49902--50269	170	2.2	171	80	6	399	39	14	13	32	1.85
49816--50463	171	3.8	170	73	6	405	40	12	12	33	1.81
63650--63967	169	1.9	160	83	4	329	40	13	12	30	1.81
90129--90181	16	3.1	18	80	19	60	43	3	5	47	1.45
94517--94549	16	2.0	17	88	5	50	51	21	9	18	1.73
163154--163185	14	2.3	14	94	0	55	31	18	6	43	1.75
191641--191685	16	2.8	16	86	0	54	37	11	11	40	1.76
247357--247407	20	2.5	20	90	0	75	33	11	15	39	1.84
261239--261289	20	2.5	20	87	0	75	37	13	15	33	1.87
303608--303667	25	2.4	25	80	5	68	23	25	18	33	1.97
305237--305261	13	1.9	13	100	0	50	8	28	0	64	1.22
320525--320574	26	1.9	26	100	0	100	24	20	16	40	1.91
344097--344123	14	1.9	14	100	0	54	3	29	0	66	1.09
444230--444419	62	3.1	62	81	5	206	27	17	19	35	1.94
470704--470809	55	1.9	55	84	3	142	49	4	9	36	1.56
476183--476251	23	3.0	23	97	0	129	20	17	31	30	1.95
483733--483771	20	2.1	19	85	9	53	41	7	2	48	1.45
561754--561800	19	2.5	19	86	3	60	65	0	21	12	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578881--578932	16	3.2	16	83	5	68	46	1	0	51	1.12
588101--588141	19	2.0	21	86	9	59	2	34	0	63	1.08
588419--588459	21	2.0	21	86	9	59	60	0	36	2	1.10
595034--595082	25	2.0	25	88	4	73	26	28	16	28	1.97
608059--608105	19	2.6	19	90	6	71	40	0	0	59	0.97
632575--632612	19	2.1	18	90	5	58	50	7	7	34	1.61
635840--636241	167	2.4	167	79	5	402	34	14	12	38	1.85
657791--659097	170	7.7	168	76	7	866	34	13	11	39	1.81
657791--659092	341	3.8	341	75	8	810	35	13	11	39	1.81
658039--659091	510	2.1	512	80	6	1165	35	13	11	40	1.80
659270--659299	15	2.1	15	93	6	53	40	0	16	43	1.48
659449--659589	74	1.9	74	83	2	185	46	6	7	40	1.57
663166--663207	21	2.1	20	91	8	68	21	0	9	69	1.17
670389--670444	25	2.2	26	83	6	69	23	16	30	30	1.96
679149--679217	25	2.6	26	73	11	61	24	14	31	28	1.95
694051--694908	344	2.5	342	77	7	799	33	13	12	39	1.83
694051--697601	171	20.8	169	72	8	1403	33	13	13	38	1.83
695263--696600	511	2.6	505	76	8	1199	35	13	12	39	1.82
695268--696500	170	7.2	170	75	6	578	34	13	12	39	1.83
695854--696615	339	2.2	340	80	7	809	35	13	12	38	1.83
695854--696803	339	2.8	340	77	8	744	34	13	13	38	1.84
695276--697328	170	12.1	170	72	9	476	34	13	13	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
699303--700820	170	8.9	170	74	8	847	38	13	13	34	1.84
728270--728307	11	3.6	11	86	10	53	44	2	7	44	1.47
769802--769839	20	1.9	19	85	15	51	28	0	10	60	1.30
804277--804636	161	2.2	164	81	6	388	40	11	12	35	1.79
805607--805916	171	1.9	160	83	6	322	40	11	10	34	1.76
825146--825636	170	2.9	169	77	6	501	34	13	12	39	1.82
870807--871737	170	5.5	168	74	8	670	34	13	12	39	1.82
870807--871504	342	2.0	341	78	5	712	34	13	13	38	1.84
897133--897163	16	1.9	16	93	0	53	12	3	16	67	1.35
915343--915372	11	2.7	11	94	0	51	23	33	16	26	1.96
916863--916916	8	7.0	8	91	6	85	0	35	0	64	0.94
916863--916916	15	3.5	16	90	7	85	0	35	0	64	0.94
916860--916915	4	14.5	4	77	7	62	0	32	0	67	0.91
918822--919504	344	2.0	344	81	4	795	41	11	11	35	1.78
918639--920058	171	8.3	168	74	7	783	39	12	12	34	1.82
935429--935864	172	2.6	173	81	4	467	41	13	12	32	1.82
935558--935955	170	2.3	171	80	5	423	37	14	13	34	1.85
942676--943477	171	4.7	170	77	7	660	39	13	12	33	1.83
942771--943477	343	2.1	339	80	6	791	40	13	12	33	1.82
947132--948095	171	5.6	169	76	9	778	31	13	13	41	1.83
947105--947625	172	3.0	171	75	7	423	31	14	14	38	1.87
947013--948095	171	6.3	171	76	8	733	32	13	13	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
948813--949150	174	2.0	159	75	12	288	29	13	10	42	1.78
953840--954208	172	2.2	170	79	4	397	32	13	12	41	1.82
954311--954639	170	1.9	170	81	7	400	36	14	12	36	1.84
973319--973360	20	2.2	19	86	4	57	28	4	7	59	1.44
1008102--1008126	10	2.5	10	100	0	50	16	24	28	32	1.96
1032799--1032844	21	2.2	22	77	18	53	26	13	17	43	1.85
1037412--1037543	36	3.7	36	86	5	187	43	13	11	31	1.80
1045639--1045694	25	2.3	24	87	6	85	30	14	30	25	1.95
1047336--1047375	21	1.9	21	85	10	55	27	12	17	42	1.85
1056429--1056536	36	3.1	34	87	6	103	32	10	13	43	1.78
1056449--1056537	36	2.5	36	94	1	153	31	12	13	42	1.81
1083929--1084066	36	4.0	34	84	8	113	28	10	15	45	1.78
1083938--1084202	35	7.5	35	77	1	233	31	9	12	42	1.75
1083938--1084202	71	3.7	71	74	2	253	31	9	12	42	1.75
1085983--1086103	35	3.4	34	84	7	143	38	4	12	43	1.64
1095972--1096065	35	2.6	36	77	3	118	30	8	17	43	1.78
1128175--1128213	20	2.0	20	89	0	60	35	0	7	56	1.28
1143244--1143275	16	2.0	16	93	0	55	40	12	15	31	1.85
1146818--1147145	171	2.0	162	79	9	340	33	12	14	36	1.84
1192593--1192630	18	2.1	18	85	9	51	55	7	0	36	1.29
1211241--1211278	20	1.9	20	100	0	76	39	5	7	47	1.55
1278948--1279748	343	2.4	338	76	7	771	36	13	14	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1280217--1280545	170	1.9	170	83	2	419	37	16	11	34	1.85
1337354--1338361	170	5.9	169	73	8	693	34	13	14	37	1.85
1361677--1361702	11	2.4	11	100	0	52	38	7	11	42	1.70
1362182--1362590	169	2.4	169	82	1	480	36	14	13	36	1.85
1387825--1388363	170	3.2	168	75	9	425	38	12	14	34	1.83
1387872--1388340	170	2.8	171	76	8	474	41	11	13	33	1.81
1388393--1391243	171	16.7	171	79	4	2530	38	11	14	35	1.83
1388392--1393118	341	13.9	339	77	6	3716	39	12	13	35	1.82
1388393--1393118	855	5.6	850	78	6	3996	39	12	13	35	1.82
1391109--1391381	151	1.8	150	86	2	395	41	9	12	36	1.76
1391259--1393118	171	10.9	171	77	5	1447	39	12	13	34	1.81
1395168--1395238	28	2.5	28	90	2	106	2	29	1	66	1.15
1430378--1430765	170	2.3	170	79	4	417	36	14	11	36	1.84
1458019--1458428	169	2.4	168	79	8	438	35	11	10	41	1.77
1468556--1468607	20	2.6	20	96	0	95	38	3	5	51	1.44
1471026--1471088	29	2.2	29	97	0	117	22	15	28	33	1.95
1475936--1476244	171	1.8	168	80	8	374	36	14	10	38	1.81
1507106--1507153	19	2.7	18	81	18	64	0	25	0	75	0.81
1507112--1507160	17	3.1	16	85	14	66	0	28	0	71	0.86
1523298--1524618	170	7.8	169	74	4	895	32	13	14	38	1.85
1523777--1524618	341	2.5	338	82	5	966	33	14	13	38	1.85
1525979--1526008	15	2.0	15	100	0	60	40	40	0	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1536175--1536553	170	2.2	170	89	2	564	39	15	13	31	1.86
1542613--1542674	25	2.5	24	84	5	79	27	9	33	29	1.88
1547291--1547340	21	2.4	21	100	0	100	34	8	16	42	1.77
1555041--1555080	21	2.0	19	85	9	53	30	5	7	57	1.48
1565851--1566367	171	3.0	169	83	3	574	39	15	13	31	1.86
1565898--1566573	171	3.9	170	80	5	551	40	15	12	31	1.85
1587807--1587843	18	2.0	19	89	5	58	40	5	8	45	1.56
1616851--1617209	169	2.1	169	80	3	382	33	13	13	38	1.84
1625284--1625317	17	2.0	17	94	0	59	44	14	11	29	1.81
1637574--1638315	336	2.2	340	80	4	793	32	12	13	40	1.83

Tables:   1   2