genome.fa.s2515.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399768.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_301.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66279

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19477--21278	171	10.6	170	74	7	1246	37	12	13	34	1.82
19939--24090	341	12.2	332	75	9	2577	38	12	13	35	1.83
21325--24090	171	16.2	170	77	6	2321	38	13	13	35	1.83
24345--24700	171	2.1	171	86	2	482	40	11	10	37	1.76
25035--25369	172	1.9	172	80	4	390	37	10	15	36	1.82
33445--33485	10	3.9	10	81	12	55	46	9	0	43	1.36
33444--33495	22	2.4	22	96	0	95	53	7	0	38	1.30
33455--33495	12	3.6	12	77	12	50	56	7	0	36	1.27
38782--39848	171	6.2	168	79	4	1003	37	12	13	37	1.82
38766--39856	343	3.2	338	80	4	1138	37	12	13	37	1.82
43722--44670	171	5.6	169	73	6	630	36	13	14	34	1.85
46218--46610	171	2.3	171	81	3	445	39	13	12	34	1.82
48602--49103	171	2.9	171	79	3	535	38	13	12	35	1.83
48793--49414	328	1.9	328	84	2	827	37	13	13	35	1.84
49158--49501	171	2.0	171	84	2	449	37	14	13	34	1.86
49785--51343	171	9.2	169	77	7	1357	38	11	14	34	1.83
49792--51272	332	4.4	334	78	6	1303	39	11	14	34	1.82

Tables:   1

The End!