Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399844.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_308.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26597

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1776--2283
171
3.0
170
78
7
485
36
13
14
33
1.85
2935--3148
35
6.1
35
83
4
268
42
14
8
33
1.76
2935--3151
71
3.1
70
83
4
283
42
14
8
34
1.76
2930--3143
106
2.0
106
90
0
338
41
14
8
35
1.76
5866--6334
171
2.8
170
77
5
450
35
12
11
38
1.80
6392--7051
171
3.9
161
76
9
310
36
14
11
37
1.83
6136--7012
342
2.6
340
79
4
933
36
13
11
36
1.81
11060--11379
171
1.9
171
87
3
475
38
12
13
36
1.82
12432--13078
171
3.8
169
80
4
694
35
12
15
36
1.85
13538--13841
150
2.0
150
83
1
376
37
9
14
34
1.79
13698--14654
171
5.6
168
74
5
686
35
11
14
35
1.81
15094--15500
171
2.4
170
80
3
433
38
10
14
34
1.81
15707--15994
159
1.8
159
81
6
368
30
12
17
39
1.87
15866--16568
172
4.1
171
72
4
538
36
10
14
34
1.80
17080--18063
171
5.8
170
83
3
1109
38
11
14
34
1.83
19136--19598
171
2.8
161
76
10
381
34
10
16
35
1.82
20234--22555
171
13.6
171
78
2
2126
34
14
11
36
1.83
20234--22787
341
7.6
342
78
4
2108
34
14
11
36
1.83
20234--22785
511
5.0
509
76
5
2136
34
14
11
36
1.83
22922--23373
172
2.6
172
82
0
494
34
15
9
38
1.81
26071--26510
171
2.6
170
82
5
474
34
16
12
34
1.86

Tables:   1

The End!