genome.fa.s26.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397279.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_239.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2022356

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 501 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4398--4736	7	50.3	7	74	14	130	28	51	13	6	1.65
4559--4757	7	29.6	7	74	14	71	29	51	11	8	1.67
4685--4750	27	2.4	27	87	0	96	27	57	7	7	1.53
4699--4743	20	2.2	21	92	4	74	26	60	6	6	1.47
5502--5545	21	2.1	21	82	0	52	34	6	18	40	1.77
8321--8383	31	2.0	32	96	3	119	28	31	0	39	1.57
17800--17852	21	2.5	21	81	3	61	39	11	16	32	1.85
18794--18933	64	2.2	64	100	0	280	35	17	16	30	1.92
18940--19135	68	2.9	68	94	1	333	36	11	20	31	1.89
20767--20943	79	2.3	79	86	4	234	42	8	9	38	1.68
20888--20999	57	2.0	56	84	5	145	43	10	7	38	1.67
21182--21226	17	2.6	17	85	0	63	53	4	40	2	1.33
21217--21327	51	2.2	51	87	4	154	45	18	17	18	1.86
21476--21514	18	2.2	18	95	0	69	56	10	12	20	1.65
21501--21693	38	5.1	38	70	13	146	41	17	12	27	1.86
21635--21822	70	2.7	69	82	8	204	40	17	12	29	1.86
45466--45535	23	3.1	22	67	15	61	41	2	4	51	1.36
45576--45664	45	2.0	45	86	4	126	44	6	2	46	1.42
45641--45688	19	2.5	19	90	10	80	47	0	2	50	1.12
48459--48486	2	14.0	2	100	0	56	50	0	0	50	1.00
48624--48657	10	3.4	10	100	0	68	73	8	0	17	1.08
55754--55792	19	2.1	19	85	9	53	76	7	7	7	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66949--66981	2	16.5	2	100	0	66	51	0	0	48	1.00
76854--76914	26	2.3	26	77	5	70	45	0	3	50	1.17
77167--77206	21	1.9	21	84	0	53	50	0	7	42	1.30
77640--77702	32	2.0	32	93	0	108	26	9	6	57	1.55
80038--80064	2	13.5	2	100	0	54	0	51	0	48	1.00
82504--82532	4	7.2	4	100	0	58	24	0	24	51	1.48
88546--88588	12	3.6	12	80	0	50	2	37	4	55	1.33
93503--93554	3	17.3	3	100	0	104	67	0	0	32	0.91
104370--104411	12	3.2	13	80	10	50	54	0	7	38	1.28
108838--108862	5	5.0	5	100	0	50	60	0	40	0	0.97
121942--122147	103	2.0	104	94	0	360	19	8	21	50	1.73
126172--126214	10	4.4	9	78	16	50	0	0	11	88	0.52
126172--126214	15	2.9	15	100	0	86	0	0	11	88	0.52
131783--131815	7	4.7	7	100	0	66	0	60	0	39	0.97
156142--156227	30	2.9	29	86	6	120	13	9	48	27	1.73
156141--156288	59	2.5	59	79	7	165	12	9	49	28	1.72
156140--156287	30	5.0	29	72	4	98	12	9	48	29	1.73
156271--156697	44	9.4	48	83	11	320	15	9	50	24	1.74
156273--156710	46	9.7	46	85	7	441	15	10	50	23	1.74
156318--156709	44	8.6	45	88	6	472	15	10	50	24	1.75
156326--156685	91	4.0	91	87	6	482	15	10	49	24	1.75
161000--161026	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169264--169292	2	14.5	2	100	0	58	51	0	0	48	1.00
203168--203221	28	2.0	28	88	3	83	53	3	1	40	1.29
236211--236500	143	2.0	143	100	0	580	34	21	14	29	1.93
243644--243891	129	1.9	129	88	3	374	35	19	12	32	1.89
284336--284376	2	22.0	2	85	14	61	0	51	0	48	1.00
288635--288706	37	2.0	35	83	5	90	37	18	18	26	1.93
289170--289218	19	2.5	20	80	6	55	46	2	4	46	1.33
289429--289637	107	1.9	108	91	0	339	37	16	2	42	1.63
299046--299409	184	2.0	185	90	1	570	44	9	10	35	1.71
300230--300303	34	2.1	35	85	7	98	58	14	0	27	1.37
302873--302899	4	6.8	4	100	0	54	77	22	0	0	0.76
309920--309963	19	2.3	19	80	0	52	59	0	2	38	1.10
310623--310661	21	1.9	20	89	5	60	33	0	0	66	0.92
317745--317790	2	23.5	2	91	4	76	47	0	0	52	1.00
337846--337889	3	14.7	3	95	0	79	65	0	34	0	0.93
340515--340556	2	21.0	2	95	0	75	47	0	0	52	1.00
348954--348999	2	23.0	2	90	0	74	50	0	4	45	1.21
360755--360779	5	5.0	5	100	0	50	60	0	0	40	0.97
360842--360875	17	2.0	17	94	0	59	50	0	0	50	1.00
360844--360899	17	3.1	17	84	7	58	55	0	0	44	0.99
360842--360900	22	2.6	22	81	10	57	54	0	0	45	0.99
360841--360901	21	2.9	21	69	13	54	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360871--360933	30	2.1	31	85	8	85	63	0	0	36	0.95
367885--367916	3	10.7	3	100	0	64	68	0	0	31	0.90
369970--370369	202	2.0	203	82	5	495	48	6	5	40	1.52
373904--373938	12	2.9	12	91	0	52	40	17	14	28	1.88
378998--379050	27	2.0	27	92	0	88	37	7	30	24	1.83
383107--383189	31	2.9	26	78	21	78	34	1	1	62	1.11
383125--383202	31	2.5	31	87	2	122	39	0	0	60	0.97
383250--383281	11	2.9	11	95	0	55	31	0	12	56	1.37
389643--389730	30	2.9	30	87	0	122	57	18	13	10	1.63
389682--389800	45	2.6	45	72	5	123	57	17	15	9	1.64
393488--393553	29	2.4	27	75	9	69	65	0	4	30	1.13
394534--394578	17	2.6	17	100	0	90	17	11	35	35	1.86
408950--409171	117	1.9	116	89	2	347	41	13	17	27	1.87
409958--409982	12	2.1	12	100	0	50	76	0	16	8	1.02
420737--420798	30	2.1	30	90	0	97	35	9	3	51	1.51
422738--422772	2	18.0	2	94	5	63	48	0	0	51	1.00
438869--439083	107	2.0	107	97	1	405	32	20	15	30	1.94
443722--443752	15	2.1	15	93	0	53	41	0	6	51	1.27
443813--443869	18	3.1	18	79	2	60	56	0	0	43	0.99
443871--443929	31	1.9	31	89	6	93	47	0	0	52	1.00
451039--451242	90	2.3	90	85	5	279	44	2	6	46	1.44
464880--464908	5	5.8	5	100	0	58	41	20	0	37	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466770--466823	27	2.0	27	100	0	108	37	18	3	40	1.69
470824--470860	18	2.1	18	94	0	65	59	0	0	40	0.97
470869--470910	21	2.0	21	86	9	59	40	0	0	59	0.97
471631--471703	29	2.6	28	81	16	96	38	2	0	58	1.12
475906--475952	19	2.6	18	83	6	58	38	2	4	55	1.31
475937--476006	31	2.3	29	76	11	70	38	1	0	60	1.06
476562--476604	16	2.7	16	96	0	77	13	16	30	39	1.87
487112--487157	12	3.9	12	78	21	53	67	6	4	21	1.32
492515--492548	3	11.3	3	93	0	59	61	0	38	0	0.96
503010--503040	2	15.5	2	100	0	62	51	0	0	48	1.00
503442--503481	7	5.7	7	96	0	62	15	20	37	27	1.92
507876--507989	59	1.9	59	92	0	192	30	20	10	38	1.86
513641--513679	2	19.5	2	94	0	69	53	0	46	0	1.00
514971--515020	16	3.2	16	69	11	50	18	24	16	42	1.89
514970--515026	30	1.9	30	92	0	96	19	28	14	38	1.90
516333--516379	24	2.0	24	86	0	67	14	21	31	31	1.94
522881--522960	25	3.2	25	68	19	76	33	2	21	42	1.66
527997--528033	19	2.0	19	89	5	58	48	2	0	48	1.15
533173--533212	2	20.0	2	94	0	71	47	0	0	52	1.00
543956--544173	116	1.9	113	85	3	301	11	48	18	21	1.79
545551--545600	17	2.9	16	78	18	55	26	0	2	72	0.96
547223--547308	33	2.9	28	73	20	77	66	1	4	27	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
547210--547295	33	2.6	33	88	1	118	67	1	3	27	1.14
555087--555132	19	2.4	19	85	7	58	19	2	2	76	1.00
555672--555719	23	2.1	23	88	0	69	62	4	18	14	1.47
557301--557343	2	21.5	2	100	0	86	51	0	0	48	1.00
563983--564033	15	3.2	16	78	15	52	72	5	1	19	1.15
574572--574743	90	1.9	87	83	5	220	42	9	22	25	1.84
574826--574860	2	17.5	2	93	0	61	51	45	2	0	1.16
581754--581876	41	3.1	40	88	4	178	30	18	22	27	1.97
581765--581885	38	3.1	39	86	4	163	29	19	23	28	1.98
585327--585357	4	7.8	4	92	0	53	19	0	3	77	0.90

Tables:   1   2   3   4   5