Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397279.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_239.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2022356

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 501 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1964746--1964795
22
2.3
22
89
0
73
16
12
26
46
1.81
1964563--1964945
203
1.9
203
85
4
531
21
10
24
42
1.85
1972581--1972627
20
2.4
19
73
13
51
38
0
0
61
0.96
1980155--1980190
17
2.1
18
89
5
56
72
2
0
25
0.98
1981421--1981483
28
2.2
28
83
10
76
30
1
3
65
1.18
1981446--1981501
19
2.8
20
74
15
62
30
0
0
69
0.89
1982047--1982073
2
13.5
2
100
0
54
48
0
0
51
1.00
1985981--1986168
94
2.0
94
92
2
315
49
4
9
37
1.54
1986167--1986216
22
2.3
22
86
10
75
54
0
4
42
1.19
1986476--1986509
16
2.1
16
88
0
50
41
0
5
52
1.25
1986517--1986561
2
23.5
2
86
8
58
53
2
0
44
1.13
2001458--2001550
45
2.1
45
100
0
186
23
15
22
38
1.92
2002647--2002700
17
3.3
17
75
12
51
48
0
3
48
1.19
2002683--2002727
22
2.0
22
82
8
54
51
0
0
48
1.00
2002990--2003056
33
2.0
33
82
0
80
38
5
11
43
1.66
2003421--2003460
15
2.6
16
88
11
57
52
2
2
42
1.28
2007129--2007163
2
17.5
2
100
0
70
48
0
0
51
1.00
2010085--2010126
21
2.1
19
86
8
57
45
7
16
30
1.74
2011818--2011873
28
2.0
29
85
3
78
30
1
7
60
1.33
2013644--2013705
19
3.2
19
69
15
54
48
0
0
51
1.00
2013622--2013705
38
2.2
40
84
4
109
46
1
1
51
1.16

Tables:   1   2   3   4   5

The End!