genome.fa.s2604.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399857.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3090.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18445

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23--3504	171	20.4	171	78	5	2908	38	13	13	35	1.83
3357--3655	151	2.0	151	80	5	336	40	14	11	34	1.82
3764--5401	171	9.6	171	75	4	1129	38	12	13	33	1.83
3880--5401	341	4.5	336	75	5	1076	37	13	13	34	1.83
3764--5401	343	4.8	340	74	5	1003	38	12	13	33	1.83
5512--7557	170	12.0	169	77	6	1687	34	12	14	37	1.84
5681--7557	341	5.5	339	74	10	1016	35	13	14	37	1.85
8224--10461	171	13.1	171	77	3	1801	35	13	12	38	1.82
10701--11645	171	5.5	168	72	7	540	33	12	13	36	1.83
11641--13051	172	8.3	171	80	5	1250	36	12	12	37	1.82
11641--13051	343	4.1	340	79	5	1344	36	12	12	37	1.82

Tables:   1

The End!