genome.fa.s2613.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018399866.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_310.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49907

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464--1450	171	5.8	170	74	6	719	34	14	11	36	1.82
488--1450	342	2.8	337	77	6	866	35	14	11	35	1.83
2682--5792	171	18.2	170	79	4	2800	36	13	11	38	1.82
2682--5792	513	6.1	510	81	4	3130	36	13	11	38	1.82
6376--6914	171	3.2	170	83	4	593	38	10	13	36	1.80
8681--9887	171	7.1	170	78	7	1174	38	12	13	35	1.82
8685--9887	342	3.5	342	83	4	1408	38	12	13	35	1.82
11258--11751	170	2.9	170	77	6	476	38	13	13	34	1.84
13182--14720	171	9.0	170	79	5	1566	38	11	14	35	1.83
13182--14720	513	3.0	510	87	3	2173	38	11	14	35	1.83
15743--16971	169	7.2	170	74	7	801	36	11	13	35	1.81
17722--18052	175	1.9	174	83	5	427	39	11	14	34	1.82
18278--20163	171	11.0	169	76	9	1504	38	11	13	35	1.82
18278--20163	343	5.5	341	79	6	1715	38	11	13	35	1.82
18278--19928	516	3.2	512	82	6	1855	39	11	14	35	1.82
21496--21800	157	1.9	157	83	3	391	37	11	14	37	1.82
21647--22684	169	6.1	168	80	5	1017	37	11	14	36	1.82
21652--22684	339	3.0	331	79	6	984	37	11	14	36	1.83
21647--22684	170	6.1	166	79	7	950	37	11	14	36	1.82
22922--27588	170	27.5	170	77	7	3456	38	11	13	35	1.81
22922--27588	679	6.9	675	76	6	3518	38	11	13	35	1.81
22922--27588	509	9.2	510	76	7	2889	38	11	13	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27870--28937	170	6.3	171	78	5	930	37	12	13	35	1.82
29173--29568	172	2.3	170	83	4	501	40	9	13	36	1.78
29676--30737	172	6.2	169	75	4	713	33	12	11	37	1.80
29676--30737	169	6.2	173	75	5	551	33	12	11	37	1.80
30888--31412	171	3.1	170	76	5	392	34	12	11	36	1.80
31433--31563	68	1.9	68	89	3	201	36	5	8	49	1.56
31268--31735	239	2.0	239	81	2	537	35	11	10	40	1.76
30915--32078	581	2.0	582	79	4	1231	35	12	11	38	1.79
31497--33081	170	9.3	171	81	5	1576	35	14	11	38	1.82
31497--33081	342	4.6	340	80	6	1510	35	14	11	38	1.82
33964--35285	171	7.7	171	77	7	1117	35	14	11	38	1.83
36821--40176	171	19.6	171	75	5	2437	35	13	12	37	1.82
42113--43273	340	3.4	339	77	4	929	36	12	13	35	1.82
42117--43531	171	8.3	170	73	6	824	37	12	13	34	1.82
44100--45169	172	6.2	170	79	6	1018	35	13	12	38	1.83
44100--45169	171	6.2	170	78	7	954	35	13	12	38	1.83
47402--48057	174	3.8	173	78	4	617	37	10	14	35	1.80

Tables:   1

The End!