genome.fa.s2990.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018400243.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3451.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11843

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36--5812	171	33.9	171	76	6	4110	37	13	13	35	1.84
5819--6203	171	2.3	171	84	0	502	39	12	12	36	1.80
6123--6303	100	1.8	100	86	2	265	42	12	10	34	1.77
5958--6474	271	1.9	270	79	2	588	40	12	10	36	1.78
6202--7383	341	3.5	338	79	4	1144	37	14	12	34	1.84
6203--7406	171	7.1	170	78	3	1051	37	14	13	35	1.85
7131--7718	305	1.9	304	82	3	702	36	13	14	35	1.85
7420--8679	171	7.4	171	80	5	1162	38	13	13	34	1.84
7421--8685	341	3.7	337	79	5	1095	38	13	13	34	1.84
8562--8814	132	1.9	132	81	6	307	41	12	13	32	1.81
8688--9953	171	7.4	169	82	4	1380	39	13	12	34	1.81
7894--9488	815	2.0	815	83	3	2037	39	13	12	35	1.82
10381--10917	171	3.2	165	76	8	473	36	11	15	34	1.84
11069--11579	171	3.0	170	82	2	569	39	9	13	35	1.78

Tables:   1

The End!