Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397557.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_167.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7499

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48--5311
171
30.9
169
77
6
4078
39
11
13
35
1.82
48--5311
341
15.4
338
77
6
4109
39
11
13
35
1.82
1862--1916
20
2.7
20
91
2
92
18
12
21
47
1.82
1--5292
685
7.8
669
75
8
3677
39
11
13
35
1.82
4176--4205
11
2.6
12
94
5
53
60
0
0
40
0.97
1--5293
511
10.4
505
76
9
2121
39
11
13
35
1.82
5178--5428
136
1.9
135
83
2
333
39
12
14
32
1.84
5038--5626
305
1.9
304
82
4
720
37
12
14
34
1.84
4846--5787
476
2.0
477
81
5
1109
38
12
14
34
1.84
5313--6291
171
5.8
170
78
7
756
40
12
13
33
1.83
5311--6095
341
2.3
337
81
5
864
40
11
14
33
1.82
6324--7450
171
6.6
170
75
7
781
38
11
13
35
1.81
6324--7379
170
6.2
166
72
10
501
39
11
12
35
1.80
6324--7420
509
2.2
509
79
6
1116
39
11
13
34
1.81

Tables:   1

The End!