genome.fa.s3185.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018400438.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3635.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15377

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1026--1515	171	2.8	170	78	4	477	36	11	15	36	1.84
1526--2725	171	7.0	171	78	4	1022	36	14	14	34	1.86
1091--1963	434	2.0	435	83	3	1087	36	13	13	36	1.84
1028--2133	605	1.8	605	80	5	1358	36	13	14	35	1.85
1574--2559	341	2.9	340	85	2	1244	36	13	14	35	1.86
1601--2557	512	1.9	512	81	3	1156	36	13	14	34	1.86
1608--2725	512	2.2	512	78	4	1124	36	13	14	34	1.86
3427--5153	172	10.1	171	77	6	1320	36	12	13	35	1.83
3418--4898	340	4.3	339	81	5	1479	37	12	14	35	1.83
3418--5153	512	3.4	499	75	9	1410	36	12	13	35	1.83
6967--9098	171	12.5	171	75	6	1292	37	14	13	33	1.86
7010--9098	342	6.1	340	76	4	1503	36	14	14	33	1.86
10118--10438	172	1.9	171	80	3	385	37	14	10	35	1.80
11518--13416	171	11.2	168	72	7	1045	34	13	13	36	1.84
11845--13089	503	2.5	501	78	7	1250	35	13	13	36	1.84
11518--13389	845	2.2	846	84	3	2346	34	13	13	36	1.84

Tables:   1

The End!