genome.fa.s3241.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018400494.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_369.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60782

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2--1224	171	7.2	171	80	3	1137	38	14	13	33	1.85
2--3161	342	9.3	338	78	6	2337	37	14	13	33	1.86
1071--1371	150	2.0	150	83	3	383	37	13	14	34	1.85
1221--3161	171	11.4	169	78	5	1710	35	14	14	33	1.87
2--3162	683	4.7	679	79	6	2891	37	14	13	33	1.86
3270--3969	171	4.1	168	77	5	667	33	14	13	37	1.85
3287--3963	341	2.0	331	80	7	738	33	14	13	37	1.85
4937--5267	171	1.9	171	82	4	409	38	14	12	34	1.84
6048--7407	171	8.0	170	81	3	1453	38	14	13	33	1.86
6044--7407	341	4.0	339	82	3	1561	38	14	14	33	1.86
6044--7404	683	2.0	684	84	3	1810	38	14	14	33	1.86
9553--12862	171	19.3	171	73	4	2127	31	13	13	37	1.84
9570--12862	512	6.4	506	74	6	1870	31	13	13	37	1.84
14366--14926	171	3.3	168	79	7	601	32	14	13	38	1.85
14795--15058	134	2.0	135	87	2	388	35	18	14	31	1.91
14655--15223	305	1.9	305	84	4	772	34	15	14	35	1.88
14934--16257	171	7.8	168	79	6	1278	33	13	14	38	1.86
14366--16254	647	2.9	647	80	8	1732	33	14	14	38	1.86
14496--15402	476	1.9	476	80	4	1058	34	14	13	37	1.85
14934--16144	513	2.4	509	83	4	1434	33	13	14	38	1.85
17563--19157	171	9.4	171	78	4	1471	37	13	13	33	1.84
17598--19157	341	4.6	339	79	3	1461	38	13	13	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20428--22402	171	11.6	171	77	5	1641	37	14	13	32	1.85
20428--22402	341	5.8	338	79	6	1705	37	14	13	32	1.85
20428--22100	683	2.4	678	81	5	1886	37	14	13	33	1.85
22928--24108	171	6.9	169	78	5	1156	32	13	15	38	1.86
22928--24101	342	3.4	337	80	5	1299	32	13	15	38	1.86
22928--24101	513	2.3	510	81	3	1329	32	13	15	38	1.86
24873--25730	342	2.5	342	81	3	953	33	13	14	38	1.85
24873--25733	171	5.0	170	80	4	818	33	13	14	38	1.85
26030--26134	48	2.2	49	84	1	140	29	4	16	49	1.66
26633--27241	171	3.6	169	84	1	689	33	13	14	36	1.85
27346--28571	171	7.2	171	83	3	1419	32	15	15	36	1.88
27353--28571	341	3.6	340	84	2	1487	32	15	15	36	1.88
28675--31683	171	17.6	169	80	4	2927	39	14	13	32	1.85
33136--33680	171	3.2	169	80	3	599	36	14	14	34	1.87
33785--35351	171	9.2	171	77	3	1400	36	14	14	32	1.87
33785--35351	341	4.6	340	78	2	1525	36	14	14	32	1.87
35526--35984	172	2.7	171	84	3	566	35	14	15	34	1.88
36586--36951	171	2.1	163	78	8	356	32	13	15	32	1.87
37702--38032	171	1.9	171	82	4	409	33	13	15	38	1.86
41728--42228	171	2.9	170	73	3	448	35	14	14	31	1.86
42329--43735	171	8.2	171	81	3	1397	37	14	14	32	1.87
44512--45270	340	2.2	341	82	7	919	38	13	15	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44512--45269	171	4.4	170	80	4	812	37	13	15	33	1.86
44512--45358	171	5.0	169	78	7	784	37	13	14	33	1.86
45465--48771	171	19.4	171	81	3	3335	33	13	14	38	1.86
49782--51238	170	8.6	169	80	3	1447	39	15	13	32	1.85
49782--51237	341	4.3	337	80	5	1471	39	15	13	32	1.85
51959--54750	171	16.4	170	77	4	2384	37	14	13	32	1.86
54853--55463	172	3.6	171	86	1	841	31	14	16	37	1.88
55697--58812	171	18.3	171	80	5	3126	33	13	14	38	1.85
59115--60782	171	9.8	171	73	3	1140	31	13	15	36	1.85
60126--60458	170	2.0	161	78	7	337	30	13	15	38	1.86

Tables:   1

The End!