genome.fa.s33.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397286.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_459.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  854433

Tables:   1   2   3   

This is table  2  of  3  ( 244 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340825--340882	15	3.9	14	80	10	71	51	5	29	13	1.63
348005--348050	23	2.0	23	86	4	65	21	15	10	52	1.73
349116--349161	14	3.1	14	81	12	56	71	2	0	26	0.97
349119--349162	6	7.3	6	85	14	56	68	2	0	29	1.02
349113--349162	18	2.8	18	83	16	61	70	2	0	28	0.99
352430--352477	17	2.8	17	81	6	53	35	2	2	60	1.20
354370--354425	17	3.5	17	72	20	57	55	0	0	44	0.99
354720--354748	2	15.0	2	92	7	51	48	0	0	51	1.00
354733--354820	38	2.3	38	98	0	167	43	11	6	38	1.67
365258--365293	12	2.9	13	84	16	58	0	41	16	41	1.48
365941--365984	21	2.0	22	86	4	63	61	9	0	29	1.27
371167--371245	31	2.5	31	83	4	88	46	10	10	32	1.71
373932--373980	23	2.1	23	81	7	55	32	18	36	12	1.88
382551--382600	6	8.3	6	93	0	55	38	0	34	28	1.57
385572--385642	34	2.1	33	84	2	88	39	21	4	35	1.73
385946--386236	100	2.9	102	82	3	327	28	16	10	44	1.81
396360--396392	12	2.5	13	90	9	50	45	0	0	54	0.99
404964--405016	28	1.9	28	85	11	74	62	11	1	24	1.39
407726--407769	21	2.0	22	91	4	72	31	0	6	61	1.22
410202--410245	18	2.4	19	88	3	63	56	0	4	38	1.20
410233--410260	11	2.5	11	100	0	56	60	0	0	39	0.97
411016--411065	21	2.2	25	82	13	63	68	0	30	2	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419866--419904	15	2.5	16	87	8	62	28	17	0	53	1.44
422741--422842	48	2.1	48	100	0	204	50	5	20	23	1.70
443082--443119	17	2.3	17	86	4	51	50	0	13	36	1.42
449380--449447	24	3.0	23	82	6	77	54	0	4	41	1.20
449380--449430	24	2.1	24	96	0	93	58	0	5	35	1.22
449673--449715	21	2.0	21	86	0	59	62	0	2	34	1.08
458377--458424	21	2.3	21	85	3	62	54	10	14	20	1.70
458386--458433	21	2.3	21	100	0	96	41	14	18	25	1.88
466317--466341	12	2.1	12	100	0	50	60	8	0	32	1.26
466079--466656	102	5.7	102	79	8	471	44	19	7	28	1.78
466079--466656	51	11.4	51	76	10	409	44	19	7	28	1.78
467465--467508	10	4.2	10	88	8	61	0	15	0	84	0.63
467465--467508	11	4.0	11	82	11	54	0	15	0	84	0.63
467465--467508	21	2.1	21	86	0	61	0	15	0	84	0.63
467468--467505	18	2.1	18	90	0	58	0	15	0	84	0.63
471522--471571	26	2.0	26	84	11	68	2	24	0	74	0.93
471525--471575	17	3.2	16	77	22	54	1	25	0	72	0.95
475942--475968	14	1.9	14	100	0	54	29	0	11	59	1.32
482435--482467	12	2.8	12	90	0	57	57	0	6	36	1.23
483093--483138	15	3.2	15	87	6	60	41	0	30	28	1.56
509406--509486	35	2.3	35	82	4	110	27	9	17	45	1.79
509857--509899	18	2.4	18	88	7	61	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509859--509913	18	3.2	18	72	12	53	65	0	0	34	0.93
509892--509920	7	4.1	7	100	0	58	72	0	0	27	0.85
519793--519841	21	2.3	21	89	0	71	28	16	28	26	1.97
519804--519860	21	2.7	21	86	0	69	29	17	29	22	1.97
519897--520012	61	1.9	61	100	0	232	27	15	28	28	1.96
526385--526418	16	2.1	16	94	0	59	38	11	23	26	1.89
534536--535256	61	11.7	62	80	4	695	27	17	17	37	1.93
534453--535286	123	6.8	121	79	4	758	28	17	17	36	1.93
534529--535256	184	3.9	183	82	3	766	28	17	17	36	1.93
534866--535093	31	7.4	30	66	8	102	27	14	19	38	1.91
535209--535380	93	1.8	93	87	2	256	32	15	14	37	1.88
535290--535528	61	3.9	60	78	3	237	31	16	15	35	1.91
535302--535528	122	1.9	123	84	0	312	30	16	15	37	1.90
534948--535703	342	2.2	343	87	2	1036	29	16	16	37	1.91
537718--537776	28	2.1	28	90	6	93	45	15	15	23	1.84
543659--543820	73	2.2	73	86	0	252	35	11	21	30	1.89
543659--543845	73	2.6	72	73	10	189	35	11	23	29	1.90
546172--546211	20	2.0	20	95	0	71	30	2	30	37	1.71
551090--551134	21	2.1	21	91	0	72	73	0	24	2	0.95
555516--555573	9	6.2	9	74	6	53	3	15	1	79	0.95
555528--555571	19	2.3	19	80	0	52	2	15	2	79	0.93
555514--555573	12	4.8	12	77	6	57	3	15	1	80	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
555731--555765	10	3.5	10	100	0	70	17	0	0	82	0.66
556508--556537	16	1.9	16	93	6	53	56	3	13	26	1.52
560639--560830	35	5.4	35	79	4	179	32	6	15	45	1.71
560639--560769	36	3.7	36	80	6	131	35	7	12	44	1.72
560636--560769	71	1.9	72	82	1	171	35	8	12	44	1.73
579092--579125	16	2.1	16	88	0	50	2	14	0	82	0.79
583924--584036	53	2.2	53	85	4	149	42	16	19	21	1.89
596893--596947	21	2.6	21	100	0	110	52	9	14	23	1.70
598985--599024	19	2.1	19	85	0	53	22	5	37	35	1.76
604060--604097	15	2.4	16	83	16	53	39	2	0	57	1.12
612969--613014	22	2.1	22	88	8	67	0	36	0	63	0.95
621187--621375	68	2.8	68	79	0	216	34	19	13	32	1.91
622693--622845	62	2.4	62	78	6	157	37	7	20	33	1.82
623733--623871	73	1.9	72	81	7	165	38	12	20	28	1.89
630529--630565	16	2.3	17	86	9	51	72	2	8	16	1.19
634264--634290	14	1.9	14	100	0	54	40	7	22	29	1.81
665872--665914	13	3.2	13	83	6	50	60	9	0	30	1.28
665877--665915	14	2.9	14	88	3	53	61	7	0	30	1.24
693283--693455	73	2.4	73	84	3	224	38	13	19	27	1.90
698189--698218	11	2.6	12	89	10	53	66	0	0	33	0.92
701584--701616	18	1.9	17	88	11	50	24	12	6	57	1.57
703909--703946	20	1.9	20	84	10	51	71	5	21	2	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
705760--705790	14	2.1	15	94	5	55	25	0	19	54	1.44
706459--706695	73	3.2	73	80	2	253	37	14	20	27	1.91
712287--712458	35	4.9	35	82	1	191	41	12	8	36	1.74
712301--712485	71	2.7	69	81	5	230	44	13	8	34	1.73
712280--712485	106	2.0	104	87	5	299	42	13	8	35	1.74
725124--725177	21	2.6	21	80	8	65	40	0	11	48	1.39
725119--725173	19	2.8	19	81	13	67	40	0	12	47	1.42
730265--730294	16	1.9	16	93	6	53	13	3	16	66	1.37
750600--750700	35	2.9	35	93	0	166	45	7	7	38	1.63
759753--759788	16	2.2	17	90	5	56	33	13	13	38	1.85
765493--765532	20	2.0	21	90	5	64	65	0	5	30	1.14
765491--765695	33	6.3	32	73	16	113	64	0	3	31	1.14
765636--765706	33	2.4	28	75	20	79	63	2	4	29	1.27
765835--765940	54	2.0	54	92	0	176	25	15	11	48	1.78
765843--765968	54	2.3	54	83	0	162	25	17	10	46	1.79
772995--773185	28	6.6	28	81	5	202	38	12	9	39	1.76
772995--773179	59	3.2	57	82	6	237	38	11	9	39	1.75
778826--778874	20	2.5	20	82	0	53	22	0	8	69	1.14
784970--785021	27	2.0	27	84	3	70	76	0	11	11	1.01
798436--798502	4	17.2	4	73	11	50	68	0	31	0	0.90
798437--798475	16	2.4	16	86	0	60	69	0	30	0	0.89
812092--812179	36	2.4	36	75	3	97	35	10	13	40	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
816649--816725	38	2.0	38	97	0	145	37	7	11	42	1.70
820972--821109	74	1.9	73	86	1	195	23	16	14	45	1.84
827861--827901	21	2.1	19	86	9	55	29	0	9	60	1.28
830984--831022	18	2.1	19	85	4	53	28	5	0	66	1.12
831276--831386	38	2.9	38	79	2	125	36	18	13	30	1.90
831364--831526	34	4.7	34	77	6	148	31	19	13	35	1.91
833898--833944	23	2.0	24	91	4	78	0	42	12	44	1.42
837062--837102	21	2.0	21	90	0	64	31	17	7	43	1.76
840070--840120	21	2.4	21	86	0	75	39	21	17	21	1.93
842885--843036	75	2.0	75	94	0	268	42	17	12	26	1.85

Tables:   1   2   3