genome.fa.s34.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397287.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_302.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  796134

Tables:   1   2   

This is table  1  of  2  ( 235 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
888--923	17	2.1	17	100	0	72	36	16	16	30	1.91
9421--9595	90	1.9	90	80	6	203	31	8	13	46	1.74
10088--10144	26	2.3	24	84	6	69	33	3	5	57	1.38
10084--10141	24	2.5	22	74	17	55	32	3	5	58	1.37
13313--13486	90	1.9	89	82	5	217	29	9	14	45	1.77
21956--21982	7	3.9	7	100	0	54	29	40	0	29	1.57
23433--23461	13	2.2	13	100	0	58	34	20	6	37	1.80
28007--28046	2	20.0	2	100	0	80	50	0	0	50	1.00
28881--28922	22	2.0	22	95	4	77	45	0	45	9	1.36
38149--38173	2	12.5	2	100	0	50	48	0	0	52	1.00
44052--44091	14	2.8	15	85	7	57	0	5	15	80	0.88
49243--49269	3	9.0	3	100	0	54	66	0	0	33	0.92
55669--55704	2	18.5	2	94	5	65	50	0	0	50	1.00
60574--60601	2	14.0	2	100	0	56	50	0	50	0	1.00
61879--61903	3	8.3	3	100	0	50	32	0	0	68	0.90
68956--68988	15	2.2	15	100	0	66	36	12	15	36	1.84
75087--75125	21	1.9	21	89	5	62	58	0	0	41	0.98
75128--75174	24	2.0	24	84	12	62	51	8	6	34	1.58
94211--94261	2	25.5	2	100	0	102	50	0	0	49	1.00
102761--102872	55	2.0	55	96	0	206	30	5	25	38	1.78
103099--103152	26	2.1	26	96	0	99	48	9	22	20	1.78
117905--117938	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125741--125803	20	3.3	20	67	24	55	36	30	6	26	1.81
127535--127569	12	2.9	12	91	0	52	48	11	0	40	1.39
128220--128320	47	2.1	47	98	0	193	43	3	16	35	1.67
131954--131997	20	2.3	19	96	4	79	29	4	20	45	1.71
132103--132134	12	2.7	12	100	0	64	0	43	6	50	1.27
137313--137345	15	2.3	15	89	5	50	42	6	9	42	1.61
140723--140880	53	2.9	54	77	7	169	37	14	15	32	1.88
146627--146721	25	3.7	25	75	8	84	34	3	10	51	1.52
146644--146706	27	2.4	27	81	5	67	38	3	7	50	1.47
156394--156744	175	2.0	174	91	1	569	34	13	18	33	1.90
158718--158760	21	2.0	21	90	0	68	34	6	25	32	1.83
177224--177266	19	2.1	21	83	8	54	60	0	4	34	1.17
179288--179318	2	15.5	2	100	0	62	48	0	0	51	1.00
179590--179771	81	2.2	80	77	4	186	44	8	10	36	1.70
179651--179713	26	2.4	27	84	7	85	53	6	6	33	1.51
179715--179768	23	2.2	24	81	15	67	42	12	9	35	1.75
180137--180163	2	13.5	2	100	0	54	51	0	0	48	1.00
183515--183550	18	2.0	18	100	0	72	61	0	5	33	1.19
184451--184549	34	2.9	34	81	3	110	40	23	13	23	1.89
188740--188781	19	2.3	18	84	8	59	47	0	2	50	1.14
188998--189042	21	2.0	23	83	8	58	48	0	0	51	1.00
205818--205864	21	2.2	22	85	11	62	38	0	4	57	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
206450--206487	20	1.9	20	88	0	58	31	13	15	39	1.86
208282--208308	4	6.8	4	100	0	54	0	22	0	77	0.76
210069--210106	2	20.5	2	84	15	55	50	0	0	50	1.00
215048--215089	19	2.1	20	82	8	50	45	11	7	35	1.69
217407--217437	7	4.4	7	100	0	62	41	12	45	0	1.42
225683--225758	36	2.1	36	92	0	125	27	10	13	48	1.75
225720--225901	47	3.9	47	86	2	233	28	10	10	50	1.71
226095--226132	19	2.0	19	90	10	60	10	28	5	55	1.56
226823--226873	20	2.5	20	76	20	52	64	1	0	33	1.05
228361--228420	21	2.9	21	79	0	66	50	11	5	33	1.61
228470--228544	21	3.5	21	78	7	80	52	14	6	26	1.67
228477--228543	22	3.2	20	78	12	71	52	16	5	25	1.66
231452--231514	33	1.9	32	84	9	83	46	3	4	46	1.40
234835--234949	39	3.0	38	77	12	119	35	23	16	24	1.95
234942--235055	39	2.9	39	84	0	156	22	21	27	28	1.99
239955--240004	26	1.9	26	91	0	82	56	2	6	36	1.36
240492--240520	2	14.5	2	100	0	58	0	48	0	51	1.00
248516--248577	20	3.0	20	77	11	70	33	1	1	62	1.14
248539--248603	30	2.2	30	91	0	103	35	6	3	55	1.40
249667--249713	2	23.5	2	100	0	94	48	0	0	51	1.00
249713--249739	2	13.5	2	100	0	54	0	0	48	51	1.00
251791--251913	64	1.9	65	86	1	176	33	14	17	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263114--263140	2	13.5	2	100	0	54	0	0	48	51	1.00
266223--266281	30	2.0	30	83	6	75	37	1	6	54	1.37
267266--267338	10	7.0	10	83	7	92	28	24	4	42	1.73
267258--267338	21	3.9	21	95	4	139	27	25	3	43	1.71
277956--278261	80	3.8	79	83	3	339	33	8	22	35	1.84
279514--279559	23	2.0	23	95	0	83	32	4	28	34	1.77
284852--284912	25	2.4	25	97	0	113	24	31	22	21	1.98
286626--286666	19	2.3	18	80	20	50	53	4	0	41	1.22
291222--291296	10	7.4	10	74	18	57	50	1	1	46	1.18
291245--291290	18	2.4	19	89	7	67	50	0	2	47	1.13
291222--291296	11	7.4	11	74	18	56	50	1	1	46	1.18
291245--291298	18	2.9	18	81	15	65	50	0	1	48	1.11
294059--294113	15	3.7	15	87	0	74	36	5	23	34	1.78
294422--294469	19	2.4	20	79	10	53	75	0	25	0	0.81
295707--295750	20	2.2	20	95	0	79	31	4	22	40	1.74
298535--298745	104	2.0	104	92	0	350	30	7	16	45	1.75
306429--306495	29	2.2	29	84	5	89	56	1	5	35	1.33
306436--306533	29	3.3	30	75	9	94	53	3	6	37	1.42
314248--314287	18	2.2	18	86	0	53	27	2	5	65	1.27
314307--314349	22	2.0	21	86	4	59	48	2	2	46	1.27
315307--315631	27	11.9	27	75	4	141	38	11	12	38	1.78
315331--315382	25	2.1	25	85	0	68	42	13	9	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315376--315627	55	4.6	55	79	2	236	38	9	13	38	1.78
315397--315615	110	2.0	110	82	1	269	37	10	13	38	1.79
315398--315631	28	8.5	28	76	5	190	38	10	13	38	1.78
316861--316887	7	3.9	7	100	0	54	14	0	29	55	1.40
318689--318742	29	2.0	27	89	10	83	35	9	7	48	1.63
319041--319079	20	2.0	20	84	0	51	35	2	2	58	1.25
322183--322221	2	19.5	2	100	0	78	51	0	0	48	1.00
322590--322637	25	2.0	25	83	4	62	27	2	4	66	1.21
322609--322651	22	2.0	22	81	9	52	27	2	6	62	1.33
327896--327945	20	2.5	19	81	9	55	26	10	2	62	1.38
333538--333568	2	15.5	2	100	0	62	48	0	0	51	1.00
334954--334987	3	11.3	3	93	0	59	64	2	0	32	1.08
335280--335356	11	8.1	10	70	27	53	76	0	3	19	0.94
335273--335347	18	4.3	17	77	14	73	78	0	2	18	0.86
340076--340249	96	1.8	96	84	0	240	32	19	14	33	1.92
340970--341008	20	2.0	20	94	0	69	28	15	20	35	1.93
343082--343120	5	7.6	5	88	5	51	23	2	2	71	1.10
344783--344820	11	3.5	11	89	3	51	63	0	21	15	1.31
345619--345674	21	2.6	22	78	16	64	25	1	16	57	1.49
352383--352427	19	2.4	19	88	0	72	31	28	11	28	1.91
360678--360711	16	2.1	16	89	10	52	82	0	2	14	0.79
360679--360747	6	11.2	6	71	22	54	76	0	4	18	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360699--360746	21	2.5	19	81	15	62	75	0	4	20	0.97
360678--360739	7	8.6	7	73	7	52	77	0	4	17	0.94
362602--362658	24	2.4	24	100	0	114	45	7	36	10	1.66
367366--367440	29	2.6	29	95	0	132	54	8	10	26	1.62
368132--368173	22	1.9	22	85	0	57	42	7	2	47	1.43
377992--378016	13	1.9	13	100	0	50	56	0	4	40	1.18
380119--380151	2	16.5	2	93	0	57	48	0	3	48	1.17
383005--383032	2	14.0	2	100	0	56	0	50	0	50	1.00
389350--389382	14	2.4	14	90	10	50	69	6	3	21	1.24
391295--391320	12	2.2	12	100	0	52	53	0	0	46	1.00

Tables:   1   2