genome.fa.s34.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397287.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_302.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  796134

Tables:   1   2   

This is table  2  of  2  ( 235 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391479--391535	25	2.3	26	82	14	68	59	0	0	40	0.97
391513--391568	17	3.3	18	74	18	57	58	1	0	39	1.08
393730--393766	18	2.0	19	89	5	58	62	2	0	35	1.10
409843--409906	30	2.2	30	83	5	87	25	0	9	65	1.22
410324--410361	17	2.2	17	86	9	51	57	2	2	36	1.26
413263--413294	2	16.0	2	100	0	64	50	0	0	50	1.00
422366--422439	14	5.0	14	72	25	55	35	0	4	60	1.15
422636--422701	24	2.7	25	82	15	77	62	0	0	37	0.96
422582--422701	23	5.0	23	71	20	77	55	0	0	43	1.05
422636--422694	18	2.9	19	82	12	57	61	0	0	38	0.96
422709--422751	20	2.2	20	84	16	54	53	0	0	46	1.00
451427--451462	18	2.0	18	94	0	63	22	25	19	33	1.97
460956--461185	116	2.0	116	93	0	397	24	19	20	35	1.96
465185--465235	23	2.3	22	86	10	68	25	1	1	70	1.08
465341--465382	15	2.8	16	85	10	61	54	0	0	45	0.99
474576--474637	29	2.2	28	81	16	74	32	4	1	61	1.27
482663--482735	29	2.6	29	81	10	82	42	5	0	52	1.24
496119--496148	2	15.0	2	100	0	60	50	0	0	50	1.00
501652--501686	15	2.3	15	100	0	70	25	28	11	34	1.91
502801--502833	2	16.5	2	100	0	66	48	0	0	51	1.00
512418--512449	6	5.3	6	96	0	55	28	53	3	15	1.57
515854--515886	16	2.0	17	94	5	59	12	21	0	66	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516631--516660	15	1.9	16	93	6	53	83	0	10	6	0.81
517992--518017	12	2.2	12	100	0	52	23	0	15	61	1.33
519594--519625	2	16.5	2	93	6	57	0	46	0	53	1.00
519794--519834	12	3.4	12	93	0	64	68	7	0	24	1.15
519794--519834	3	13.7	3	84	0	55	68	7	0	24	1.15
532919--532949	2	15.5	2	100	0	62	48	0	0	51	1.00
537873--537922	20	2.5	19	79	20	50	18	0	6	76	0.99
538679--538733	20	2.8	20	81	10	67	0	30	0	69	0.89
538683--538734	16	3.3	16	81	7	54	0	32	0	67	0.91
538700--538736	13	2.9	13	81	18	51	0	35	0	64	0.94
538748--538809	19	3.0	21	77	20	67	1	27	0	70	0.96
538764--538796	11	3.1	11	86	4	50	0	18	0	81	0.68
547562--547603	15	2.8	15	92	0	66	33	7	26	33	1.83
547910--548026	15	8.0	15	71	20	79	28	0	1	69	1.04
547899--548005	24	4.4	24	76	10	76	28	0	1	69	1.05
547872--547986	50	2.3	50	80	7	126	28	1	0	68	1.05
547899--548029	33	4.2	31	75	22	89	29	0	1	67	1.05
547910--548009	5	20.4	5	68	15	66	27	1	2	70	1.05
564277--564438	69	2.3	69	74	11	152	32	24	15	27	1.95
564989--565034	19	2.6	18	86	10	60	56	6	2	34	1.37
566155--566201	24	2.0	24	91	0	76	55	17	6	21	1.64
566359--566398	16	2.4	16	83	4	53	40	22	0	37	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569055--569080	2	13.0	2	100	0	52	50	0	0	50	1.00
573921--573950	2	15.0	2	100	0	60	0	0	50	50	1.00
574949--574991	14	3.0	15	73	13	54	69	11	0	18	1.17
580641--580772	68	2.0	67	83	4	167	34	9	23	33	1.86
596653--596727	16	4.7	16	75	6	71	37	0	2	60	1.11
596638--596710	31	2.4	30	84	11	94	35	4	1	58	1.25
596669--596729	17	3.7	17	80	6	81	42	0	3	54	1.17
596654--596709	15	3.7	15	83	4	76	35	0	1	62	1.06
596653--596727	31	2.3	33	90	6	127	37	0	2	60	1.11
596670--596721	15	3.3	15	76	7	59	38	0	3	57	1.17
596810--596855	13	3.5	13	85	11	51	63	10	0	26	1.27
603331--603450	63	1.9	61	91	3	195	45	12	4	37	1.61
606864--606918	19	2.9	18	92	7	76	27	21	12	38	1.90
606873--606918	19	2.4	19	100	0	92	30	19	15	34	1.93
610323--610350	2	14.0	2	100	0	56	50	0	0	50	1.00
625946--625986	21	2.0	21	90	0	64	31	17	12	39	1.86
626084--626148	30	2.2	30	83	5	78	35	9	23	32	1.86
627184--627269	39	2.2	40	83	10	106	53	2	3	40	1.31
627248--627417	93	1.9	90	80	10	197	55	0	1	41	1.14
646850--647124	110	2.5	111	78	5	279	36	18	13	31	1.90
646938--647146	110	1.9	109	83	4	269	36	18	14	30	1.91
648034--648074	14	2.9	14	85	0	55	0	29	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648034--648077	18	2.5	18	81	3	54	0	29	0	70	0.88
648084--648190	53	2.0	53	92	0	178	11	42	9	36	1.73
653413--653503	41	2.2	42	92	2	148	58	2	0	39	1.10
653415--653517	8	12.8	8	68	13	59	57	1	0	40	1.10
653413--653516	41	2.5	42	87	6	135	58	1	0	39	1.09
653513--653571	27	2.1	28	84	9	77	50	5	0	44	1.24
653524--653578	27	2.0	27	82	6	67	50	3	0	45	1.19
653505--653671	88	1.9	88	81	9	207	59	2	0	36	1.17
653633--654042	154	2.6	154	85	5	522	54	3	1	40	1.30
653845--653924	42	1.9	42	89	2	126	52	1	2	43	1.22
653845--653937	42	2.2	42	86	3	125	52	1	2	44	1.20
655224--655309	35	2.4	34	83	11	102	54	2	1	41	1.20
655275--655303	14	2.1	14	93	6	51	55	0	0	44	0.99
655392--655533	74	1.9	74	86	0	203	46	9	4	40	1.55
663528--663555	2	14.0	2	100	0	56	50	0	0	50	1.00
664593--664626	15	2.3	15	89	0	50	41	0	5	52	1.25
667969--668114	72	2.0	72	84	5	188	30	19	23	26	1.98
677289--677371	41	2.0	41	86	4	114	37	18	6	38	1.75
679865--679928	28	2.3	28	89	5	94	26	15	7	50	1.71
696973--697005	17	1.9	17	88	11	50	78	3	9	9	1.05
708361--708400	20	2.0	21	90	5	64	20	2	7	70	1.24
710782--711014	118	2.0	119	89	0	360	31	26	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712820--712875	27	1.9	30	86	13	82	23	0	12	64	1.27
714636--714696	32	1.9	32	89	0	95	32	22	11	32	1.90
720320--720353	16	2.1	16	94	0	59	14	5	17	61	1.52
724226--724422	74	2.7	74	80	10	224	42	15	19	22	1.89
726879--726935	21	2.8	20	72	15	55	33	1	1	63	1.15
729090--729363	29	9.6	28	79	5	273	40	9	12	37	1.75
729090--729371	57	4.9	57	77	8	252	41	9	12	37	1.75
734267--734341	20	3.7	20	76	1	69	34	14	13	37	1.85
735398--735467	31	2.3	31	82	5	88	31	8	7	52	1.59
736670--736707	19	2.0	20	94	5	69	47	0	7	44	1.32
738658--739255	300	2.0	300	92	0	991	36	20	20	23	1.95
742085--742145	27	2.3	27	97	0	113	26	9	13	50	1.72
759072--759234	66	2.5	66	92	3	276	59	6	9	24	1.52
759100--759204	33	3.2	33	62	20	83	54	3	10	31	1.52
762974--763019	16	2.6	17	86	10	58	19	2	4	73	1.10
762965--763019	19	3.1	17	82	15	58	20	1	5	72	1.13
771640--771757	61	1.9	61	98	0	227	52	5	11	29	1.61
778174--778205	16	2.0	16	93	0	55	50	21	6	21	1.71
782349--782450	45	2.3	45	89	0	150	29	14	23	32	1.94
782341--782460	45	2.7	46	79	10	149	29	16	22	31	1.96
782556--782628	25	3.0	23	77	11	74	42	17	10	28	1.83
783950--783990	18	2.2	19	86	8	57	78	0	17	4	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
788706--788745	19	2.0	20	86	13	57	37	7	7	47	1.60
788877--788915	21	2.0	20	85	10	53	56	15	0	28	1.40
788951--789007	30	1.9	30	92	0	96	38	1	3	56	1.27
788907--789016	30	3.7	30	72	14	93	38	9	3	49	1.52
793863--793934	34	2.1	34	85	7	94	59	13	0	26	1.35

Tables:   1   2

The End!