Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018400750.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_393.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19629

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4648--6071
171
8.3
169
79
6
1346
37
11
14
37
1.82
4648--6071
341
4.2
341
82
4
1550
37
11
14
37
1.82
4648--6071
512
2.8
507
82
5
1622
37
11
14
37
1.82
6320--6915
169
3.5
174
78
8
648
37
11
14
37
1.81
7025--7345
171
1.9
171
87
1
473
39
11
13
34
1.82
7452--8322
171
5.1
169
81
5
941
38
11
14
36
1.81
7452--8331
341
2.6
341
83
4
1080
37
11
13
36
1.81
8430--9246
171
4.8
171
78
5
787
39
11
13
36
1.79
7503--9216
929
1.8
929
82
3
2227
39
11
13
35
1.81
9040--9486
230
1.9
231
84
6
595
34
10
14
40
1.80
12383--13721
171
7.9
171
81
5
1483
38
11
14
35
1.82
15974--16493
171
3.1
170
80
4
586
37
11
14
34
1.83
16084--16461
165
2.3
163
84
5
470
41
11
12
34
1.79
18250--18669
169
2.5
169
86
2
563
40
9
13
35
1.78
18809--19629
171
4.8
171
76
4
548
37
11
13
34
1.81
18806--19629
342
2.4
341
77
4
859
37
11
13
34
1.81

Tables:   1

The End!