genome.fa.s3555.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018400808.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_3982.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14636

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2511--4582	171	12.1	172	75	6	1468	34	13	13	39	1.83
2511--4589	511	4.1	507	75	8	1437	34	12	13	39	1.83
2584--4238	853	1.9	853	83	4	2115	34	13	13	39	1.83
2529--4533	682	2.9	671	77	6	1808	34	13	13	38	1.83
2514--4582	342	6.1	340	77	6	1734	34	13	13	39	1.83
5235--6451	171	7.1	171	75	7	922	33	12	14	39	1.84
5343--6436	341	3.2	339	77	7	856	33	12	14	39	1.84
9459--10198	342	2.2	339	82	4	875	37	13	13	36	1.84
9460--10875	171	8.3	169	75	7	792	38	12	13	35	1.82
9459--10833	338	4.0	337	76	6	1066	38	12	13	35	1.83
11400--14616	170	18.9	169	77	4	2509	39	13	12	33	1.83
11727--14632	512	5.7	509	84	2	3595	39	13	13	34	1.83

Tables:   1

The End!