genome.fa.s3575.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018400828.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_400.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30386

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15--788	171	4.5	168	75	9	471	34	13	12	36	1.83
1422--3126	170	10.0	170	69	5	796	31	12	11	38	1.80
6469--6797	170	2.0	160	85	4	358	35	13	11	36	1.81
7175--7541	172	2.1	171	81	6	413	34	13	10	41	1.78
7282--7698	172	2.4	163	77	8	329	34	14	8	39	1.77
9353--9770	171	2.4	172	81	5	476	37	11	11	40	1.76
10373--10700	168	2.0	168	85	3	446	34	13	10	41	1.79
10742--11247	171	3.0	171	77	9	512	37	13	10	38	1.78
10742--11551	172	4.7	171	75	7	523	35	13	11	36	1.81
12067--12596	171	3.1	170	78	6	466	38	10	14	34	1.81
12807--14195	171	8.1	169	80	5	1155	39	10	14	35	1.81
12807--14187	341	4.1	336	80	6	1261	39	10	14	35	1.81
15123--16514	341	4.1	338	74	6	948	34	13	11	38	1.81
15123--16514	171	8.2	170	75	5	808	34	13	11	38	1.81
17152--18589	170	8.4	170	76	6	1001	33	13	12	39	1.82
17142--18589	510	2.8	515	77	5	1238	33	13	12	38	1.82
20404--21400	171	5.9	168	74	9	473	35	13	11	39	1.80
20741--21300	170	3.3	170	80	7	512	36	12	10	40	1.77
20741--21400	171	3.9	170	79	7	545	36	13	11	39	1.80
21877--22281	170	2.4	170	86	1	526	34	13	11	40	1.81
23880--24335	170	2.7	169	77	4	445	33	13	10	40	1.79
24207--24930	171	4.2	170	75	4	542	34	11	11	39	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27800--28464	171	3.9	171	79	6	623	40	11	12	35	1.79
28757--29601	170	5.0	170	79	6	781	39	11	14	35	1.82
29745--30158	171	2.4	171	78	1	427	38	11	12	35	1.79

Tables:   1

The End!