genome.fa.s3630.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018400883.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_405.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52700

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7007--7365	171	2.1	171	81	4	420	37	13	13	35	1.85
9151--10137	171	5.8	170	77	8	851	34	14	13	36	1.86
12444--12883	174	2.6	171	77	5	440	35	11	11	40	1.77
18480--19687	171	7.1	170	75	6	742	34	13	13	38	1.83
18480--19700	343	3.6	339	76	6	1031	34	13	13	38	1.83
25865--26400	171	3.2	167	74	9	455	37	12	15	34	1.86
26555--26883	171	2.0	160	82	4	322	36	11	15	33	1.83
29498--29810	171	1.8	169	80	9	377	38	14	10	35	1.81
31704--32037	172	2.0	161	79	10	352	37	12	13	33	1.82
31655--32963	512	2.6	510	80	4	1470	38	13	13	34	1.83
32776--32815	21	1.9	21	84	0	53	30	17	12	40	1.86
31636--33474	171	10.8	171	76	2	1357	37	13	13	34	1.84
31655--33474	513	3.5	510	78	4	1638	37	13	13	34	1.85
33687--33769	34	2.4	35	93	6	150	26	4	10	57	1.52
34270--34717	171	2.6	169	83	4	542	34	12	14	39	1.83
34270--34780	171	3.0	171	81	4	478	34	13	13	38	1.84
36217--36882	341	2.0	332	79	2	656	37	11	11	34	1.79
36339--36903	171	3.3	170	77	3	499	39	12	11	33	1.79
38010--38052	19	2.3	18	81	14	52	53	2	0	44	1.13
38417--39414	171	5.8	171	73	4	627	39	12	11	34	1.78
38417--39400	343	2.9	343	77	3	796	39	12	11	34	1.78
38622--39571	513	1.8	504	79	7	1070	39	12	11	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38622--40014	513	2.7	504	76	7	1051	37	12	12	34	1.81
40195--45909	513	11.2	510	80	5	5106	37	12	13	35	1.83
40195--43607	171	20.0	171	78	5	3035	37	12	14	35	1.83
43670--45909	171	13.1	171	80	3	2274	37	12	13	35	1.82

Tables:   1

The End!