genome.fa.s3706.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018400959.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_412.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86336

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1697--2012	171	1.8	171	80	4	377	37	11	13	34	1.81
4928--6288	171	8.0	169	72	4	723	35	12	14	32	1.83
8123--8530	170	2.4	170	80	6	448	35	15	13	35	1.87
8882--9494	171	3.6	169	78	5	581	38	13	13	33	1.83
11029--11676	171	3.8	171	74	5	425	35	10	13	37	1.80
13052--14570	171	9.0	169	70	6	579	36	11	13	32	1.80
13961--14577	170	3.6	170	75	5	445	37	11	13	34	1.81
13961--14577	341	1.8	331	81	2	691	37	11	13	34	1.81
15499--15812	170	1.9	160	83	5	321	39	9	12	35	1.76
16578--16887	170	1.9	160	81	4	302	38	12	13	32	1.82
16537--17183	171	3.8	171	75	5	522	38	11	13	33	1.81
17337--18703	171	8.0	170	74	4	852	35	11	13	33	1.80
19690--20158	171	2.7	170	80	2	494	36	10	11	38	1.77
20724--20757	18	2.0	17	88	11	52	64	5	0	29	1.17
21191--22413	171	7.2	170	72	3	670	35	10	14	33	1.81
22828--23303	170	2.8	171	74	3	393	37	12	13	32	1.81
24471--24856	171	2.2	173	80	5	431	36	13	15	35	1.86
25866--25943	26	3.1	26	94	3	133	43	11	12	32	1.79
27426--28190	170	4.5	168	75	2	632	39	11	12	33	1.80
28657--29128	171	2.8	170	79	3	491	39	11	13	33	1.80
30014--30890	169	5.2	169	73	6	567	36	11	14	33	1.82
35669--36000	170	2.0	160	86	6	448	37	12	10	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46787--47245	170	2.7	167	77	8	437	34	13	11	37	1.82
47377--47979	170	3.5	170	74	7	486	35	13	12	34	1.83
49742--49790	16	3.0	15	80	16	53	28	2	4	65	1.22
53153--53867	169	4.2	168	80	3	729	36	13	11	38	1.81
58083--59045	171	5.7	169	74	7	639	38	11	13	33	1.80
58083--59044	342	2.8	334	76	6	812	38	11	13	33	1.80
60244--61923	171	9.9	169	71	7	781	34	13	10	36	1.80
61610--61923	170	1.9	157	75	13	283	34	12	11	36	1.80
71610--72325	171	4.2	169	74	5	542	34	13	11	37	1.80
74570--75011	172	2.6	170	81	6	480	34	10	11	40	1.76
75224--76216	171	5.8	168	74	6	631	35	12	11	37	1.79
76703--77520	171	4.8	167	73	7	594	34	13	11	36	1.80
77766--79928	171	12.6	168	68	6	876	34	12	10	36	1.78
80516--80871	171	2.1	171	80	4	387	33	14	12	38	1.84

Tables:   1

The End!