genome.fa.s38.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397291.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_182.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  632866

Tables:   1   2   

This is table  1  of  2  ( 186 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3183--3235	16	3.4	15	77	10	61	50	0	1	47	1.12
10489--10515	14	1.9	14	100	0	54	22	3	7	66	1.33
10683--10725	18	2.5	17	85	7	59	39	2	2	55	1.25
13515--13561	25	2.0	24	87	8	69	10	14	38	36	1.81
15559--15585	14	1.9	14	100	0	54	51	7	0	40	1.30
21024--21566	76	7.3	74	77	6	427	24	15	26	33	1.95
21132--21416	144	2.0	145	86	2	403	24	15	27	32	1.95
21054--21492	220	2.0	221	83	4	564	24	15	26	33	1.95
24169--24453	150	1.9	148	81	4	340	30	15	21	32	1.94
25982--26087	31	3.4	31	86	0	140	33	18	15	32	1.92
26885--27004	23	5.2	23	71	7	82	20	23	20	35	1.96
27731--28002	23	11.9	23	73	6	149	25	30	12	31	1.92
27934--28031	23	4.2	24	69	10	67	30	28	11	29	1.91
27889--28031	70	2.0	70	88	5	209	27	30	11	30	1.92
34855--34884	15	2.1	14	93	6	51	0	50	13	36	1.42
38664--38691	12	2.3	12	100	0	56	0	46	14	39	1.44
40417--40456	20	2.0	20	85	9	55	47	2	2	47	1.29
45595--45694	30	3.4	28	68	14	67	30	8	40	22	1.82
56743--56771	7	4.3	7	95	4	51	58	10	0	31	1.31
59900--59945	13	3.7	13	74	11	51	60	0	39	0	0.97
59895--59939	21	2.1	22	87	4	65	60	0	40	0	0.97
59904--59948	24	2.0	24	83	12	60	57	0	42	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66776--66831	27	2.1	27	86	0	76	30	14	10	44	1.79
66791--66843	27	2.0	27	84	0	70	26	13	15	45	1.82
66899--66968	28	2.5	28	83	4	88	28	14	14	42	1.84
66708--67051	125	2.8	124	76	9	322	31	12	12	43	1.81
67078--67144	27	2.4	27	82	2	80	29	10	13	46	1.76
66899--67238	189	1.8	189	80	6	422	30	12	12	43	1.80
68146--68179	12	2.7	13	90	4	52	50	0	0	50	1.00
70595--70667	36	2.0	36	100	0	146	42	8	10	38	1.70
76405--76620	105	2.1	105	84	1	281	41	10	21	27	1.85
79477--79515	17	2.3	17	86	8	53	38	5	15	41	1.69
79461--79852	195	2.0	195	88	1	579	31	11	12	45	1.77
81472--81610	68	2.0	68	83	0	170	35	10	21	32	1.88
84858--84898	5	7.8	5	84	10	55	19	21	2	56	1.54
86715--87013	40	7.7	40	76	13	275	25	17	18	39	1.92
86710--87007	77	3.8	78	78	11	265	25	16	19	38	1.92
87965--88099	63	2.1	63	90	2	209	17	17	12	53	1.73
108013--108048	18	2.0	18	94	0	63	22	36	11	30	1.89
111683--111746	30	2.2	30	88	2	94	42	1	23	32	1.64
111913--111969	24	2.4	24	96	0	105	33	22	12	31	1.91
115085--115124	2	20.0	2	100	0	80	50	0	0	50	1.00
117709--117885	85	2.1	87	82	4	216	37	12	15	33	1.86
124931--125111	93	1.9	96	88	3	278	24	16	11	48	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139200--139261	28	2.3	26	91	5	97	33	11	12	41	1.79
139088--139251	84	2.0	84	83	2	213	39	14	14	31	1.86
140091--140221	62	2.1	62	97	1	244	37	12	6	43	1.69
142450--142573	62	2.0	62	98	0	239	35	18	8	37	1.82
143899--143981	31	2.7	31	82	0	94	31	22	21	24	1.98
145379--145433	22	2.5	22	87	0	83	21	14	23	40	1.90
146880--146919	20	2.0	21	90	9	66	60	5	2	32	1.32
154021--154051	2	15.5	2	100	0	62	51	0	0	48	1.00
163958--164119	25	6.5	25	70	4	94	21	11	27	39	1.87
167027--167103	32	2.6	29	76	15	79	38	15	7	37	1.77
175163--175325	25	6.5	25	70	8	89	22	13	23	39	1.90
186124--186157	17	1.9	18	88	5	52	29	5	0	64	1.17
186891--186976	27	3.1	27	80	11	104	26	16	17	39	1.90
186909--186985	27	2.8	27	80	7	84	28	15	18	37	1.91
191453--191593	73	1.9	73	91	0	228	34	14	21	29	1.93
191454--191615	73	2.2	73	84	0	207	35	14	21	28	1.92
200432--200569	73	1.9	73	83	0	177	36	13	20	29	1.91
201833--202072	52	4.7	52	80	1	277	22	8	21	48	1.76
202065--202098	14	2.4	14	95	0	59	23	8	20	47	1.78
207974--208002	4	7.2	4	100	0	58	24	0	24	51	1.48
210741--210803	22	3.2	20	84	11	76	49	11	1	38	1.48
210742--210778	2	18.5	2	88	0	56	48	5	0	45	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215865--215978	59	1.9	59	90	0	183	33	23	17	25	1.96
215991--216023	2	16.5	2	93	0	57	48	3	0	48	1.17
221176--221200	12	2.1	12	100	0	50	40	16	28	16	1.89
226084--226125	21	2.1	20	86	8	59	28	2	9	59	1.41
230196--230240	21	2.2	20	88	4	63	24	0	11	64	1.26
233572--233613	16	2.7	16	92	3	68	21	7	7	64	1.43
234352--234598	80	3.1	80	83	4	293	31	8	24	35	1.85
248543--248585	19	2.2	20	87	4	61	20	27	16	34	1.94
249637--249819	100	1.8	103	86	3	273	33	24	2	38	1.70
249991--250080	45	2.0	44	89	2	135	11	33	5	50	1.61
265843--265885	7	5.9	7	78	10	50	0	30	0	69	0.88
265837--265897	4	15.8	4	78	10	56	0	32	0	67	0.91
265840--265897	16	3.8	16	82	11	77	0	32	0	67	0.91
271182--271244	8	7.1	9	77	15	60	76	0	6	17	0.99
271190--271244	18	3.1	18	77	15	60	74	0	7	18	1.04
274034--274062	12	2.3	13	94	5	51	20	0	13	65	1.26
277496--277623	56	2.3	56	81	6	136	25	27	7	39	1.83
282347--282384	20	1.9	19	89	5	58	60	0	0	39	0.97
286797--286894	23	4.3	23	67	5	72	32	24	10	32	1.89
286797--286894	46	2.1	46	83	7	119	32	24	10	32	1.89
286781--286910	69	1.9	69	80	3	154	35	20	11	32	1.89
287203--287232	15	2.0	15	93	0	51	33	13	16	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287315--287368	28	2.0	28	96	3	101	29	35	9	25	1.87
287870--287919	21	2.3	22	86	3	66	16	6	2	76	1.08
288201--288270	23	3.0	23	78	12	81	25	28	12	32	1.93
288378--288557	69	2.6	69	78	1	191	33	21	12	32	1.91
288444--288534	23	4.0	23	76	0	101	31	21	13	32	1.92
290833--290882	24	2.1	24	84	0	64	46	18	30	6	1.73
293091--293169	25	3.1	26	77	3	97	31	27	12	27	1.93
303530--303649	58	2.1	57	88	1	186	39	15	8	37	1.77
309268--309315	22	2.2	22	96	0	87	47	10	4	37	1.57
310268--310320	22	2.4	22	78	12	56	73	0	7	18	1.06
321858--322607	170	4.4	167	75	9	588	39	12	12	35	1.81
321870--322513	341	1.9	339	78	6	710	39	11	13	36	1.81
323977--324035	24	2.4	24	78	16	66	30	13	15	40	1.86
323977--324129	82	1.9	82	91	0	252	27	11	16	44	1.82
323990--324188	82	2.5	79	81	5	226	29	13	17	40	1.87
324604--324637	14	2.4	14	85	0	50	35	0	5	58	1.22
324944--325113	82	2.1	80	85	4	225	39	14	14	31	1.87
326370--326540	83	2.1	80	86	3	234	38	14	15	31	1.87
332751--332784	15	2.3	15	94	0	59	50	0	0	50	1.00
333259--333311	22	2.4	22	80	0	61	24	3	22	49	1.66
333415--333476	23	2.7	22	80	2	61	37	24	9	29	1.87
336911--336944	10	3.3	10	91	4	50	0	14	0	85	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336911--336944	11	3.0	11	91	4	50	0	14	0	85	0.60
340419--340579	31	5.2	31	63	20	75	24	21	16	37	1.93
340279--340734	62	7.4	61	80	5	409	26	15	17	40	1.89
340776--340994	61	3.6	61	72	7	104	28	15	16	39	1.89
340794--340965	61	2.8	60	75	1	164	30	13	15	40	1.87
341101--341577	62	7.8	61	77	4	361	27	16	18	34	1.93
341372--341469	30	3.2	30	76	13	119	28	20	18	32	1.96
341098--341577	123	3.9	122	75	4	401	27	17	18	34	1.93
343355--343384	11	2.6	12	89	10	53	13	16	6	63	1.50
348251--348303	23	2.3	23	80	3	63	54	16	5	22	1.63

Tables:   1   2