genome.fa.s38.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397291.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_182.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  632866

Tables:   1   2   

This is table  2  of  2  ( 186 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351505--351562	22	2.6	22	71	10	64	20	8	27	43	1.81
351624--351696	22	3.3	22	71	7	67	45	21	9	23	1.81
351624--351716	44	2.1	44	81	0	105	47	19	8	24	1.77
352734--352787	22	2.5	22	78	6	65	16	11	31	40	1.84
369904--370028	23	5.5	22	75	12	92	35	18	28	18	1.94
370210--370362	23	6.7	23	72	5	114	31	13	31	24	1.93
370210--370334	44	2.8	44	68	11	101	32	12	31	24	1.92
371276--371440	23	7.2	23	71	11	79	36	13	27	21	1.91
371274--371440	46	3.6	46	80	6	153	36	13	28	21	1.91
371275--371440	69	2.4	69	77	4	183	36	13	28	21	1.91
374710--374754	23	2.0	23	86	0	63	42	20	20	17	1.90
374794--375189	23	17.3	23	65	4	163	32	12	27	21	1.90
374772--374881	46	2.4	46	87	3	150	37	15	25	21	1.93
375025--375149	44	2.8	45	79	3	135	35	12	28	23	1.92
375589--375625	17	2.1	18	90	5	58	37	13	13	35	1.84
377040--377526	23	21.4	23	75	5	291	35	14	28	21	1.92
376991--377121	46	2.8	45	84	6	147	40	12	25	21	1.89
377197--377258	10	5.6	10	72	20	52	35	4	35	24	1.77
377193--377270	10	6.8	12	70	21	51	34	7	34	23	1.83
377447--377511	22	3.0	22	100	0	130	40	18	23	18	1.92
385021--385225	81	2.5	80	77	6	189	33	13	24	28	1.93
391922--391970	26	1.9	25	87	4	71	40	10	16	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395197--395274	41	1.9	41	89	0	120	20	17	8	52	1.71
395370--395448	40	2.0	40	82	5	97	26	17	11	44	1.83
397235--397300	31	2.1	31	97	0	123	25	22	13	37	1.91
397380--397458	40	2.0	40	85	5	106	27	16	10	45	1.79
400077--400154	41	1.9	41	89	0	120	21	19	8	50	1.75
400249--400329	40	2.0	40	82	0	99	25	18	9	45	1.80
400357--400622	69	3.8	69	80	1	262	25	18	14	40	1.89
403266--404323	171	6.2	171	81	2	1126	38	14	13	33	1.86
404625--404717	35	2.7	35	86	0	114	32	26	12	27	1.93
406132--406181	26	1.9	26	88	8	75	36	20	14	30	1.91
412367--412482	60	1.9	60	84	6	155	22	28	21	27	1.99
413888--417735	171	22.1	171	71	8	1893	32	12	14	36	1.84
413888--417735	684	5.5	683	77	8	3486	32	12	14	36	1.84
415663--417735	341	6.1	339	76	5	1753	33	13	14	36	1.85
419911--420241	170	2.0	161	82	8	327	37	14	11	34	1.82
419500--420683	171	6.9	171	70	3	646	35	14	12	31	1.82
430846--430911	17	3.7	17	72	18	62	36	6	4	53	1.46
467874--467920	22	2.1	23	88	11	71	27	6	17	48	1.71
480033--480110	38	2.1	38	95	0	138	38	10	19	32	1.85
484157--484190	15	2.2	16	89	5	52	29	0	2	67	1.05
484571--484645	38	2.0	38	94	0	132	32	18	9	40	1.83
508915--509013	49	2.0	49	96	0	180	41	11	24	23	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518864--518888	13	1.9	13	100	0	50	8	16	20	56	1.65
524874--524934	21	2.9	21	85	2	77	42	16	14	26	1.87
524886--524941	21	2.7	21	88	0	76	41	16	16	26	1.88
535237--535261	13	1.9	13	100	0	50	56	20	16	8	1.65
539657--539730	35	2.1	36	87	2	105	36	6	16	40	1.75
553562--553779	35	6.3	35	76	3	145	41	11	6	35	1.68
554074--554318	36	6.9	36	74	1	199	42	13	7	33	1.72
554067--554384	35	9.1	34	73	8	192	41	12	8	34	1.73
554067--554318	71	3.6	70	73	4	238	42	13	7	32	1.71
557335--557386	25	2.1	24	85	3	68	25	25	21	28	1.99
566801--566842	21	2.1	20	86	8	59	59	11	0	28	1.33
581365--581397	16	2.1	15	94	5	57	45	18	0	36	1.49
592704--592758	20	2.8	19	76	17	58	30	0	9	60	1.28
593672--593721	17	2.8	18	82	17	77	36	0	18	46	1.49
595175--595217	16	2.7	16	82	10	52	62	16	0	20	1.32
596028--596062	16	2.3	15	95	5	61	37	0	17	45	1.48
598087--598127	21	2.1	19	86	9	55	60	9	0	29	1.28
605104--605165	21	3.0	21	85	0	79	24	17	19	38	1.93
616394--616436	21	2.1	21	91	4	70	79	0	2	18	0.85
616405--616438	13	2.8	12	91	8	52	85	0	0	14	0.60
621734--621778	23	2.0	23	95	0	81	62	4	15	17	1.49
631058--631105	20	2.6	19	87	9	64	41	4	0	54	1.20

Tables:   1   2

The End!