genome.fa.s3849.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018401102.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_426.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63829

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13--4762	171	28.1	169	68	8	1516	34	12	11	36	1.79
310--1554	515	2.4	512	77	5	1123	35	12	11	38	1.79
776--2874	344	6.2	344	73	7	1085	34	13	11	37	1.80
2503--2828	172	2.0	162	85	2	361	37	12	9	37	1.77
4174--4585	170	2.4	170	86	5	537	34	13	13	38	1.83
5567--5897	172	2.0	161	82	4	326	38	12	9	36	1.76
7033--8227	172	7.0	171	80	3	1154	35	13	11	38	1.81
7033--8227	345	3.5	341	79	4	1206	35	13	11	38	1.81
9185--9541	170	2.1	170	83	6	456	36	13	11	38	1.81
9724--11222	172	8.7	171	73	6	834	35	12	11	38	1.78
11601--13374	172	10.4	167	74	8	1109	34	13	12	37	1.83
11643--12328	343	2.0	332	77	9	720	33	13	11	38	1.82
13870--14195	171	2.0	161	84	6	347	37	13	9	36	1.78
14212--14863	342	1.9	329	76	8	607	35	12	10	37	1.78
13836--15088	172	7.3	172	77	5	879	35	12	10	37	1.77
15460--16650	172	6.9	172	76	3	763	36	13	10	36	1.79
17480--17855	171	2.2	170	81	3	430	36	12	13	38	1.82
20429--20947	170	3.0	169	72	11	423	39	12	12	33	1.81
22010--22663	342	1.9	341	81	3	796	34	14	11	40	1.81
22008--22663	171	3.8	171	75	4	608	34	14	11	40	1.82
23629--24208	172	3.4	170	80	6	619	34	13	13	38	1.85
23659--24364	172	4.1	172	78	5	526	34	13	12	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24392--24880	171	2.9	172	77	2	412	34	14	11	35	1.82
33414--33995	171	3.4	168	78	6	534	40	13	11	35	1.80
33433--34060	171	3.7	169	76	7	522	40	12	12	34	1.81
34167--35193	171	6.0	169	75	6	802	37	11	13	35	1.81
34460--34781	166	2.0	158	76	12	298	35	12	13	36	1.82
40044--40773	171	4.3	171	73	4	526	33	14	11	37	1.83
40103--40771	342	2.0	332	80	4	677	33	14	11	36	1.82
41416--42180	172	4.5	172	74	3	639	34	14	11	35	1.82
43830--44125	156	1.9	156	82	2	371	35	14	12	37	1.84
51598--52246	172	3.8	170	77	3	550	36	12	10	36	1.79
57399--57438	21	2.0	20	85	14	55	0	25	5	70	1.08

Tables:   1

The End!