genome.fa.s39.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397292.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_251.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  480488

Tables:   1   2   

This is table  2  of  2  ( 205 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231832--233193	170	8.0	168	74	8	831	39	11	13	35	1.81
233526--233815	156	1.9	156	82	0	364	39	13	15	32	1.85
233524--234695	481	2.4	487	86	6	1579	38	13	14	33	1.85
234251--234612	170	2.1	171	82	3	442	38	14	14	32	1.86
236376--237441	171	6.3	171	76	7	487	34	13	12	39	1.82
236519--237452	171	5.5	168	75	9	514	35	13	11	39	1.82
236562--237384	341	2.4	338	76	6	748	35	13	11	40	1.80
238106--240056	171	11.3	168	72	9	906	33	14	13	38	1.85
238100--238853	341	2.2	342	82	4	909	34	12	12	39	1.82
243787--244439	340	2.0	325	78	10	674	34	13	12	38	1.81
243764--244547	171	4.6	169	75	5	656	34	13	12	38	1.83
246490--246531	20	2.2	20	95	4	77	57	4	4	33	1.41
246335--247116	171	4.6	167	73	11	490	39	12	12	33	1.82
246611--247118	171	3.0	168	75	11	505	39	13	12	34	1.83
247694--248428	171	4.3	169	73	8	438	39	14	13	33	1.84
247701--248318	336	1.8	336	80	5	737	38	14	13	33	1.85
249149--249253	4	25.5	4	70	16	72	0	32	0	66	0.98
249149--249256	29	3.6	30	74	20	102	0	32	0	66	0.98
249149--249251	46	2.3	46	91	5	165	0	33	0	66	0.99
249171--249256	28	3.0	28	83	6	111	0	32	1	66	1.00
249362--249395	5	6.4	5	87	12	50	2	20	0	76	0.92
249362--249395	17	2.1	15	89	10	50	2	20	0	76	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250901--251788	490	1.8	490	82	1	1161	36	14	14	32	1.86
253166--253648	178	2.8	170	75	11	471	37	14	14	33	1.86
253166--253595	178	2.4	176	79	7	477	36	14	15	33	1.88
254550--254946	170	2.3	172	77	8	400	41	11	11	34	1.78
257668--257717	12	3.6	14	75	20	59	2	38	0	60	1.09
263661--263685	13	1.9	13	100	0	50	0	24	4	72	1.02
270412--270839	170	2.5	171	84	3	542	36	15	15	32	1.89
279524--279563	20	2.1	20	90	9	66	45	5	5	45	1.47
285962--286383	170	2.5	169	79	6	390	40	12	12	34	1.81
301746--303986	171	13.2	169	74	8	1302	37	14	13	34	1.85
301746--303986	342	6.6	338	74	8	1457	37	14	13	34	1.85
305125--305156	16	2.0	16	93	0	55	53	12	21	12	1.71
305881--306346	169	2.7	168	77	7	451	36	15	13	35	1.86
306366--307404	171	6.1	166	73	8	676	36	13	12	37	1.83
307560--307667	52	2.1	52	89	0	162	38	12	21	26	1.90
318141--318188	14	3.5	13	80	8	51	58	12	0	29	1.35
320577--320882	80	3.8	80	77	1	274	32	23	9	31	1.86
322652--322834	36	5.2	36	74	4	144	43	15	6	34	1.72
326315--326622	171	1.8	171	81	1	384	33	17	12	37	1.87
329134--329218	36	2.4	36	82	2	91	43	16	4	35	1.69
331332--331553	80	2.8	78	84	4	273	33	10	22	34	1.88
334340--335503	170	6.9	169	73	10	592	34	14	13	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
334738--334784	20	2.3	21	73	23	55	36	8	6	48	1.59
335079--335675	170	3.5	166	77	8	564	33	14	13	38	1.85
336733--338809	171	12.2	169	74	9	1356	34	13	12	38	1.83
336860--338552	341	5.0	330	75	10	1181	34	13	13	38	1.84
336733--338810	341	6.1	333	72	11	1098	34	13	12	38	1.83
339213--339611	171	2.3	171	80	5	398	34	15	12	37	1.85
339288--339633	171	2.0	172	82	3	421	34	14	12	38	1.83
339472--339767	151	2.0	152	79	4	330	35	13	13	36	1.85
340415--340461	13	3.5	13	85	2	58	8	34	2	55	1.42
343365--344472	511	2.2	509	78	5	1103	35	12	12	39	1.82
343091--344875	171	10.5	170	73	7	836	35	13	13	37	1.83
343775--344875	510	2.2	508	78	6	1091	36	13	12	37	1.83
347627--347836	80	2.6	80	84	4	273	32	9	24	33	1.87
352189--352291	51	2.0	51	100	0	206	36	7	21	33	1.82
364602--364737	73	1.9	73	84	0	182	27	16	16	38	1.90
370315--373694	171	19.8	171	72	9	1856	38	13	13	35	1.84
370857--371485	347	1.8	346	82	5	824	38	12	13	35	1.83
370806--373694	341	8.5	338	73	10	1636	38	13	13	34	1.84
370675--372597	511	3.8	506	76	8	1219	37	13	13	35	1.84
376335--376501	68	2.5	68	85	0	235	35	18	8	37	1.81
379564--380205	336	1.9	336	81	8	784	34	13	13	38	1.84
379594--380206	171	3.6	167	74	11	558	34	13	13	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381870--381911	21	2.0	21	81	9	50	47	4	7	40	1.52
386263--386430	68	2.5	67	79	3	183	33	8	20	36	1.84
386739--386796	27	2.2	26	80	17	66	29	8	13	48	1.73
391229--391368	73	1.9	73	82	2	174	27	22	15	34	1.94
391992--392039	14	3.4	14	72	11	53	39	20	8	31	1.82
391983--392040	28	2.1	28	100	0	116	44	17	6	31	1.75
393075--393231	73	2.2	73	80	0	179	33	17	22	26	1.96
395744--395768	7	3.6	7	100	0	50	48	0	16	36	1.46
397750--397794	21	2.2	20	88	4	63	28	2	0	68	1.01
416288--416368	36	2.2	36	86	4	110	32	9	16	41	1.81
416300--416429	36	3.7	35	79	5	91	33	8	15	42	1.77
432039--432074	15	2.4	15	100	0	72	25	8	0	66	1.19
435095--435196	52	2.0	52	98	0	195	36	15	21	26	1.93
455838--456053	111	1.9	111	87	5	312	39	5	11	43	1.63
468621--468765	35	4.1	35	81	5	112	35	20	29	15	1.93
468662--468770	35	3.1	35	81	2	119	35	20	28	15	1.93
480006--480349	28	11.9	29	76	16	281	39	10	12	37	1.77
480022--480108	29	3.2	25	78	15	68	36	11	12	39	1.80
480078--480146	36	1.9	36	88	5	104	33	8	14	43	1.76

Tables:   1   2

The End!