genome.fa.s3983.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018401236.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4382.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19409

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686--1859	171	6.9	171	77	5	980	38	13	13	34	1.84
864--1859	341	2.9	344	77	5	930	38	12	13	34	1.83
2106--5330	171	18.9	171	78	4	2731	38	13	13	35	1.83
2106--5330	512	6.3	512	81	3	2947	38	13	13	35	1.83
2106--5344	683	4.7	683	79	4	3000	38	13	13	35	1.83
6122--6259	73	1.9	73	82	5	172	26	22	19	31	1.98
6542--7901	171	8.0	169	76	6	1044	37	13	13	35	1.85
6542--7899	343	4.0	339	78	5	1340	37	13	13	35	1.85
6540--7901	513	2.7	510	79	5	1404	37	13	13	35	1.85
8317--8364	23	2.1	23	96	0	87	54	12	12	20	1.70
15224--17991	171	16.2	170	78	6	2269	37	13	13	35	1.84
15224--19078	850	4.6	848	79	7	3615	38	13	13	35	1.83
15224--19078	341	11.4	340	75	9	1902	38	13	13	35	1.83
18012--19078	170	6.3	170	80	5	1045	39	12	12	35	1.81
15224--19078	508	7.6	511	77	8	2575	38	13	13	35	1.83

Tables:   1

The End!