genome.fa.s40.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397293.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_69.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  418364

Tables:   1   

This is table  1  of  1  ( 100 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2582--2682	29	3.5	28	83	5	121	37	11	10	39	1.77
2575--2682	28	3.7	29	85	3	146	38	12	10	38	1.76
4300--4339	19	2.2	19	86	4	55	50	2	2	45	1.28
19725--19769	21	2.1	23	84	12	60	28	2	8	60	1.39
55556--55599	20	2.3	20	88	7	65	40	6	2	50	1.42
65429--65510	41	2.0	41	100	0	164	39	24	12	24	1.89
66684--66745	22	2.8	22	72	25	58	69	1	6	22	1.20
71568--71616	6	8.5	6	80	6	57	81	2	4	12	0.91
71559--71621	17	3.7	17	77	12	67	76	1	6	15	1.07
71851--71947	51	1.9	51	89	0	149	36	12	18	32	1.88
71845--72086	52	4.7	51	76	2	205	36	17	15	29	1.91
71860--72086	103	2.2	102	77	5	233	36	16	16	29	1.92
72000--72230	89	2.6	87	81	5	255	38	19	13	28	1.90
88399--88426	5	5.6	5	100	0	56	17	17	0	64	1.30
104831--104973	67	2.1	67	84	0	178	25	15	27	30	1.96
106972--107013	22	1.9	22	85	0	57	42	2	19	35	1.64
116084--116183	22	4.7	22	71	7	82	31	5	18	46	1.70
116084--116178	42	2.3	42	98	0	181	31	4	17	46	1.68
124150--124207	29	2.1	29	81	15	70	22	6	6	63	1.43
130221--130246	2	13.0	2	100	0	52	0	50	0	50	1.00
130340--130404	10	6.9	10	76	13	66	36	1	9	52	1.43
130346--130404	28	2.1	28	93	0	100	37	1	8	52	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130339--130406	4	17.0	4	78	0	55	38	1	8	51	1.42
130350--130406	18	3.2	18	84	0	78	38	1	7	52	1.39
130339--130411	12	6.0	12	76	19	62	36	1	8	53	1.39
140492--140522	16	2.0	16	93	6	55	35	12	12	38	1.82
141291--141498	36	6.0	36	77	5	173	43	12	9	34	1.75
141281--141462	71	2.6	70	76	5	181	42	12	8	36	1.73
141413--141491	32	2.5	32	91	0	122	45	6	10	37	1.63
154291--154550	68	3.8	68	77	1	252	36	8	18	36	1.82
155986--156054	32	2.2	32	94	2	122	37	10	13	39	1.78
161258--161311	28	1.9	28	96	0	99	62	12	1	22	1.39
162315--162399	29	2.9	29	83	0	116	35	14	25	24	1.93
170026--170293	62	4.1	67	81	9	277	50	13	17	18	1.77
171781--171848	15	4.7	15	75	14	72	63	0	35	1	1.04
171780--171848	7	9.6	7	76	10	68	63	0	34	1	1.03
177270--177518	36	6.6	38	71	16	144	38	18	16	26	1.92
177263--177518	76	3.4	76	80	3	293	38	18	16	26	1.91
185362--185460	28	3.4	28	80	13	117	31	15	8	45	1.75
192785--192823	12	3.4	12	82	13	55	51	0	0	48	1.00
196313--196355	22	2.0	22	90	0	68	44	9	0	46	1.35
211512--211568	30	1.9	30	85	0	78	49	8	14	28	1.72
211558--211668	30	3.7	30	80	5	118	40	9	18	31	1.82
213263--213424	60	2.8	60	85	6	201	38	12	8	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
213252--213424	29	5.9	28	80	10	186	36	12	8	42	1.74
215987--216033	3	15.7	3	100	0	94	65	0	0	34	0.93
217770--217884	45	2.5	44	83	5	140	26	14	17	41	1.88
222023--222069	20	2.3	20	82	10	60	2	31	0	65	1.04
222760--222803	21	2.0	22	91	4	72	31	0	6	61	1.22
227486--227809	68	4.8	68	77	9	290	37	9	18	34	1.84
227565--227811	70	3.7	67	81	4	221	37	10	18	33	1.85
227931--228000	31	2.3	31	85	7	90	28	22	28	20	1.98
234979--235030	21	2.4	21	87	6	68	65	0	34	0	0.93
240591--240631	11	3.7	11	86	0	55	43	4	0	51	1.23
245261--245411	71	2.1	71	82	0	176	33	18	13	35	1.90
246638--246663	11	2.4	11	100	0	52	26	0	0	73	0.84
248180--248248	33	2.1	33	100	0	138	44	30	2	21	1.67
249767--249805	7	5.6	7	87	0	51	0	28	0	71	0.86
255157--255204	19	2.6	19	93	3	80	39	6	0	54	1.26
255540--255702	61	2.7	61	80	6	170	38	11	20	30	1.87
259946--260002	24	2.4	24	87	0	78	33	22	15	28	1.95
261900--261962	27	2.4	27	84	12	87	61	1	0	36	1.05
265475--265500	6	4.3	6	100	0	52	0	0	30	69	0.89
270375--270468	37	2.5	39	94	3	165	30	7	20	41	1.80
279661--279754	22	4.3	22	68	15	61	54	0	1	44	1.07
289465--289576	57	2.0	57	91	3	181	38	16	16	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
289992--290033	2	21.0	2	100	0	84	50	0	0	50	1.00
304278--304462	91	2.0	90	96	1	343	17	17	23	41	1.89
309696--309737	19	2.3	19	88	8	61	35	0	2	61	1.09
311694--311729	19	1.9	19	88	5	56	33	2	5	58	1.36
314037--314081	22	2.0	22	100	0	90	31	4	20	44	1.71
315301--315352	23	2.2	24	80	10	63	40	5	9	44	1.61
320025--320284	145	1.8	141	85	5	360	26	13	19	41	1.87
324237--324356	63	1.9	64	84	1	161	46	16	8	28	1.76
331735--331826	42	2.2	42	90	3	141	28	22	20	28	1.99
332913--332954	22	2.0	21	86	9	59	52	23	7	16	1.68
332924--333260	184	1.8	184	88	3	518	42	23	13	20	1.87
333203--333296	37	2.6	37	93	1	154	38	24	10	26	1.88
333615--333657	22	2.0	22	86	9	61	51	16	11	20	1.75
333987--334030	21	2.0	22	82	4	54	27	0	11	61	1.30
334509--335242	171	4.3	172	77	6	749	36	11	13	38	1.80
339112--339510	171	2.3	171	81	2	444	33	15	16	34	1.91
339353--339653	149	2.0	150	86	1	417	32	15	16	34	1.91
339503--352143	171	73.4	169	73	8	7073	32	13	13	37	1.84
339503--352399	342	37.5	342	76	5	9698	32	13	13	37	1.84
339503--352399	512	25.0	513	76	5	10178	32	13	13	37	1.84
362251--362284	15	2.3	15	90	5	52	64	2	11	20	1.39
371892--372038	73	2.0	73	80	5	163	25	19	15	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381985--382147	77	2.1	76	89	3	247	39	14	6	39	1.72
391139--391167	10	2.7	11	94	5	51	75	10	13	0	1.04
394223--394404	35	5.3	35	78	8	180	43	12	7	35	1.71
394223--394377	71	2.2	69	82	6	172	42	12	9	36	1.74
397341--397519	23	7.9	23	75	7	114	30	24	10	35	1.88
397341--397509	67	2.5	67	80	1	185	30	24	10	35	1.88
397544--397604	23	2.7	23	84	0	68	34	19	13	32	1.90
397569--397698	46	2.8	46	89	6	176	33	21	13	30	1.92
397598--397674	23	3.3	23	71	7	84	32	22	15	29	1.95
397611--397688	23	3.4	23	70	7	77	32	24	12	30	1.93
397910--397980	26	2.7	26	82	2	79	53	7	14	25	1.65
404650--404687	14	2.7	14	84	8	51	23	10	2	63	1.39

Tables:   1

The End!