genome.fa.s4009.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018401262.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4407.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14532

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528--4889	170	25.6	170	78	6	3084	39	11	14	34	1.81
751--4887	851	4.9	842	79	6	3474	39	11	14	34	1.82
529--4889	340	12.8	339	79	5	3425	39	11	14	34	1.81
5335--6000	170	3.9	166	78	7	638	34	14	12	39	1.83
6311--6674	171	2.1	171	73	1	363	32	14	12	37	1.84
6771--8593	341	5.3	340	76	4	1266	34	13	12	38	1.82
6783--8593	171	10.6	171	74	6	1073	34	13	12	38	1.82
9082--9639	171	3.3	168	77	7	473	34	15	13	37	1.86
9369--9996	171	3.7	168	78	5	550	33	14	12	39	1.83
10406--10812	173	2.4	171	80	3	424	36	14	10	38	1.80
11107--11471	170	2.1	169	84	3	455	33	13	13	40	1.83
11672--11827	78	2.0	78	98	0	303	39	12	17	30	1.87
11750--12107	171	2.1	170	81	5	420	40	13	13	32	1.83
12411--12450	21	2.0	20	85	14	55	65	2	0	32	1.06
12367--13192	171	4.9	168	80	3	805	38	10	14	36	1.81
12302--13194	343	2.6	339	80	3	951	37	11	14	36	1.82
13118--13261	68	2.1	68	85	3	191	40	8	20	30	1.81
12945--13422	240	2.0	240	79	3	514	38	10	17	34	1.84
12777--13582	411	2.0	411	79	4	892	38	10	15	35	1.81
13186--14532	171	8.0	171	74	11	976	38	10	14	35	1.82
13186--14532	170	8.0	168	75	9	1012	38	10	14	35	1.82
13186--14532	341	4.0	342	75	10	857	38	10	14	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13186--14532	510	2.6	505	79	8	1452	38	10	14	35	1.82

Tables:   1

The End!