Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018401310.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_445.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23924

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
574--897
171
1.9
170
86
4
465
37
15
9
37
1.81
1633--2897
170
7.5
170
71
7
694
35
13
10
36
1.79
4425--4755
171
2.0
160
76
11
303
34
14
9
37
1.80
6179--7519
171
7.9
170
79
5
1203
35
14
11
38
1.82
6112--7530
341
4.2
336
78
7
1348
35
14
11
37
1.82
6329--7530
511
2.3
508
79
6
1300
36
14
11
37
1.82
8036--8287
122
2.1
122
83
0
315
37
17
11
33
1.86
8158--8591
171
2.5
172
84
3
538
36
14
11
37
1.82
10294--11834
170
9.0
168
75
9
1050
35
13
12
37
1.82
14969--16013
171
6.1
171
81
6
1051
35
15
12
37
1.84
15225--16013
346
2.3
344
81
5
866
36
15
12
35
1.85
16235--16600
172
2.1
170
79
8
397
34
14
13
37
1.86
17595--19270
171
9.8
169
76
8
1057
35
13
11
37
1.82
17718--18481
340
2.2
339
82
5
891
34
15
11
38
1.83
20406--22136
171
10.1
170
80
6
1749
36
14
11
37
1.82
20406--22136
513
3.4
503
81
6
1925
36
14
11
37
1.82

Tables:   1

The End!