Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018401435.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4563.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16041

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
326--934
171
3.6
170
82
3
605
35
12
13
33
1.83
1153--1473
171
1.9
161
78
10
335
37
9
13
37
1.76
1729--3122
171
8.2
171
76
5
1084
36
10
13
35
1.79
3859--5408
170
9.1
171
75
5
1223
38
10
13
34
1.78
3860--5407
171
9.1
169
74
6
803
38
10
13
34
1.78
3859--5408
341
4.5
341
75
5
1195
38
10
13
34
1.78
7010--7341
171
2.0
161
89
0
421
36
10
15
33
1.83
7926--8849
171
5.5
168
76
6
782
38
11
12
35
1.79
7951--8849
341
2.6
334
79
4
881
38
11
13
35
1.80
9336--10438
170
6.5
169
75
6
598
38
9
13
35
1.78
9235--10576
171
7.9
170
75
5
955
36
10
14
35
1.79
9235--10439
341
3.5
338
76
5
944
37
9
13
35
1.79
10684--11322
172
3.7
171
77
1
571
34
14
10
36
1.79
11362--12202
171
4.9
170
78
5
781
35
14
10
38
1.81
12962--13639
341
2.0
342
81
3
801
35
14
9
39
1.78
12897--13662
170
4.5
170
80
3
781
36
13
9
38
1.79
14229--14557
171
2.0
161
77
10
324
35
14
10
36
1.80
14843--16040
341
3.5
338
76
4
937
35
12
10
38
1.78
14843--16040
171
7.0
169
75
6
913
35
12
10
38
1.78

Tables:   1

The End!