genome.fa.s4323.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018401576.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_47.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65087

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--2031	170	11.9	170	79	4	1803	35	13	12	39	1.82
1--2027	341	6.0	339	77	6	1634	35	13	11	39	1.82
2818--4282	170	8.5	169	75	11	739	34	14	12	38	1.84
3353--4307	340	2.8	339	82	2	1171	35	13	11	38	1.82
4435--5802	171	8.0	169	72	6	832	33	13	12	37	1.83
4502--5617	171	6.5	172	75	7	840	33	14	12	37	1.83
4425--5617	513	2.3	512	75	7	1142	33	13	12	38	1.83
6185--10247	171	23.9	170	77	6	3122	34	13	12	39	1.83
6185--10247	341	11.9	341	78	7	3332	34	13	12	39	1.83
10568--11513	171	5.6	168	80	5	830	34	11	13	40	1.81
10689--11470	341	2.3	342	82	4	909	35	12	13	39	1.82
11419--11616	105	1.9	105	82	2	254	31	9	12	45	1.74
11695--14140	171	14.2	171	70	11	603	34	14	12	38	1.84
11695--12117	172	2.5	172	81	3	478	34	14	12	38	1.84
12079--12437	198	1.8	198	87	3	544	34	15	12	37	1.85
12236--14142	171	11.2	172	77	4	1596	34	14	12	38	1.84
14484--14822	169	2.0	171	82	4	418	35	13	13	36	1.85
15130--15439	168	1.8	168	80	2	370	36	11	12	39	1.80
16049--16957	341	2.7	338	82	3	1047	40	11	12	35	1.80
16049--16978	171	5.5	169	80	4	924	39	11	13	35	1.81
16970--17026	27	2.1	27	86	0	78	31	12	29	26	1.92
16798--17158	198	1.8	198	85	3	512	36	12	15	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19593--20764	171	6.9	171	79	5	1048	36	13	10	38	1.80
19593--20764	341	3.4	338	78	7	1147	36	13	10	38	1.80
19823--20751	512	1.8	513	85	2	1310	36	14	11	37	1.82
20949--23144	170	12.9	169	79	4	1964	35	13	12	38	1.82
20969--23083	511	4.1	507	81	4	2081	35	13	12	38	1.82
23502--24336	342	2.4	336	76	5	791	33	13	13	35	1.84
24872--25159	160	1.8	159	82	3	373	38	10	13	37	1.79
25579--26040	171	2.7	171	77	3	459	36	10	13	36	1.80
27996--28035	21	1.9	21	84	0	53	22	15	12	50	1.77
28300--28623	170	2.0	160	80	6	289	37	12	12	34	1.81
29743--29781	20	1.9	20	84	5	51	20	17	12	48	1.80
32967--34622	171	9.7	170	77	6	1386	34	13	12	38	1.82
39472--39842	171	2.2	171	80	2	406	33	13	12	40	1.82
44042--44099	25	2.3	25	100	0	116	18	22	12	46	1.82
48636--49716	171	6.3	166	76	8	854	34	12	11	40	1.81
48643--49716	341	3.1	338	79	5	1058	34	12	12	40	1.81
48636--49719	512	2.1	512	80	5	1206	34	12	11	40	1.80
49642--49800	86	1.9	84	86	2	228	28	13	8	49	1.71
55928--57198	171	7.4	170	77	6	1068	33	12	12	40	1.82
55928--57198	512	2.5	511	80	4	1405	33	12	12	40	1.82
55928--57187	683	1.8	683	83	3	1676	34	12	12	40	1.82
55928--57193	341	3.7	342	81	3	1451	33	12	12	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62694--64094	171	8.3	170	79	9	1289	35	13	11	39	1.82
62694--64094	332	4.1	332	78	10	1265	35	13	11	39	1.82
62832--64094	503	2.5	501	87	4	1732	34	13	12	39	1.82

Tables:   1

The End!