genome.fa.s4536.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018401789.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_49.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52012

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3874--5362	171	8.7	170	71	5	707	36	12	12	34	1.81
7016--7267	131	1.9	132	85	2	346	39	9	15	35	1.80
7141--9027	171	11.0	170	79	5	1682	38	12	13	35	1.83
7142--9006	343	5.4	341	80	6	1890	38	12	13	35	1.83
8917--9154	127	1.9	127	89	0	368	30	14	15	39	1.87
9213--10031	341	2.4	341	80	4	920	39	11	14	34	1.82
9044--10031	171	5.8	170	76	8	842	39	12	13	34	1.82
10331--11382	172	6.2	172	80	4	1081	37	12	13	36	1.82
10331--11324	343	2.9	340	84	3	1221	38	11	13	36	1.82
16537--17928	171	8.1	171	82	4	1400	38	12	14	35	1.84
16537--17928	684	2.0	682	81	5	1616	38	12	14	35	1.84
17711--18165	237	1.9	238	83	3	594	41	9	14	34	1.79
17939--18605	171	3.9	168	80	5	678	37	11	14	35	1.83
19038--19449	169	2.4	168	78	7	429	35	14	10	39	1.81
19038--19492	171	2.7	168	76	9	429	35	13	10	40	1.80
24713--25091	170	2.2	170	81	4	426	39	11	14	33	1.83
26638--28293	171	9.7	169	79	6	1541	36	13	12	38	1.82
31075--32606	170	9.0	170	76	6	1292	38	11	14	35	1.83
31075--32606	342	4.5	342	77	8	1213	38	11	14	35	1.83
34162--35856	171	9.9	170	76	5	1290	38	11	14	35	1.82
34248--35855	341	4.7	342	77	5	1389	38	11	14	35	1.82
34233--35714	512	2.9	509	78	5	1318	38	11	14	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36516--37325	171	4.7	167	73	9	601	39	10	13	34	1.81
37821--38288	171	2.7	172	72	6	439	35	13	14	33	1.86
39216--39418	105	1.9	105	87	2	300	34	12	16	35	1.86
39038--39589	276	2.0	276	82	2	660	36	12	15	35	1.85
39314--40572	171	7.4	171	80	4	1261	39	11	14	34	1.82
40708--41606	172	5.3	169	80	4	941	38	11	13	36	1.81
40708--41606	343	2.6	341	85	3	1157	38	11	13	36	1.81
42969--44994	171	11.8	171	78	4	1662	38	11	13	34	1.82
45475--47124	171	9.6	171	78	5	1427	36	13	12	38	1.82
45477--47098	343	4.7	339	79	5	1496	35	13	11	38	1.82
47155--47592	172	2.6	172	81	4	508	31	14	12	41	1.83
47985--48705	172	4.2	170	78	5	576	40	11	12	35	1.79

Tables:   1

The End!